Pinned Repositories
bio-formats-documentation
Bio-Formats documentation
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
bioformats2raw
Bio-Formats image file format to raw format converter
CellProfiler
An open-source application for biological image analysis
omero-metadata
OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/
omero-ms-zarr
Experimental micro-service for implementing the Zarr spec over HTTP
omero-user-scripts
Plugins for OMERO
zarr-labels
bioformats2raw
Bio-Formats image file format to raw format converter
CellProfiler
An open-source application for biological image analysis
erindiel's Repositories
erindiel/zarr-labels
erindiel/bio-formats-documentation
Bio-Formats documentation
erindiel/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
erindiel/bioformats2raw
Bio-Formats image file format to raw format converter
erindiel/CellProfiler
An open-source application for biological image analysis
erindiel/crowd_public
erindiel/omero-metadata
OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/
erindiel/omero-ms-zarr
Experimental micro-service for implementing the Zarr spec over HTTP
erindiel/omero-user-scripts
Plugins for OMERO
erindiel/db95e797-a074-468c-89ac-5e79f8cd154f
erindiel/IDC-Tutorials
Self-guided notebook tutorials to help get started with using IDC
erindiel/napari
napari: a fast, interactive, multi-dimensional image viewer for python
erindiel/NEUBIAS_AnalystSchool2020
erindiel/omero-parade
OMERO.web plugin for displaying Dataset thumbnails or Plates in webclient center panel
erindiel/python-bioformats
Read and write life sciences file formats
erindiel/stardist
StarDist - Object Detection with Star-convex Shapes
erindiel/surfcut-python
Python port of surfcut
erindiel/vizarr
A minimal, purely client-side program for viewing Zarr-based images with Viv & ImJoy.
erindiel/webinar-notebooks
Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar