etetoolkit/treematcher

command line tool

Closed this issue · 2 comments

jhcepas commented

The command line tool is now usable, but with very basic options.
Some more stuff should be included. For instance, options for reading target trees and pattern expressions from files, reporting matches visually or as newick, reporting just number of hits, etc..

fransua commented

The command line tool is not working for several reasons:

  • the imports are not found, they should be absolute imports (as before)
  • review the ways the trees are input
  • review the output options (not working either)

I have commented the commits where these points were added.

we should try to run the tool before closing this issue.

fransua commented

With the integration of the treematcher into the quotedname branch, previous bugs are fixed.
However there are still some errors to correct: