etetoolkit/treematcher

Issues

• ete3 merge

  #45 opened 7 years ago by jhcepas
  1

• update documentation in README

  #44 opened 7 years ago by jhcepas
  0

• restructure repository in preparation for merging with `ete3`

  #39 opened 7 years ago by jhcepas
  0

• clean up and update unitest

  #41 opened 7 years ago by jhcepas
  0

• ensure python 2 and python 3 compatibility

  #46 opened 7 years ago by jhcepas
  0

• check and improve `ete search` tool

  #42 opened 7 years ago by jhcepas
  2

• command line tool

  #17 opened 7 years ago by jhcepas
  2

• `pattern.find_matches(tree)` or `treematcher.find_matches(tree, pattern)`?

  #43 opened 7 years ago by jhcepas
  3

• treematcher tutorial

  #40 opened 7 years ago by jhcepas
  0

• relaxed matches (regular expression like syntax)

  #22 opened 7 years ago by jhcepas
  0

• Functionality standards

  #24 opened 7 years ago by dpliakos
  0

• strange behavior of regex with wild char

  #26 opened 7 years ago by fransua
  1

• Incomplete Code Segment in ete_treematcher.py

  #23 opened 7 years ago by djokester
  1

• README and basic usage documentation

  #7 opened 8 years ago by jhcepas
  0

• not sure what smart_lineages function is used for

  #18 opened 8 years ago by jhcepas
  2

• review examples in README

  #21 opened 8 years ago by jhcepas
  0

• A good real case example

  #19 opened 8 years ago by jhcepas
  0

• review unit tests

  #20 opened 8 years ago by jhcepas
  3

• title in documentation

  #16 opened 8 years ago by jhcepas
  0

• make caching optional

  #12 opened 8 years ago by fransua
  1

• only event label per node

  #13 opened 8 years ago by jhcepas
  0

• do not document internal variables as docstrings

  #14 opened 8 years ago by jhcepas
  1

• shortcuts for common queries

  #6 opened 8 years ago by jhcepas
  1

• remove the preprocessing from shortcut functions

  #11 opened 8 years ago by fransua
  0

• docstring documentation is missing in TreeMatcher class and functions.

  #8 opened 8 years ago by jhcepas
  2

• Implement a cache system for complex queries

  #4 opened 8 years ago by jhcepas
  1

• find_match should be an iterator returning all found matches.

  #3 opened 8 years ago by fransua
  0

• python 2/3 compatibility

  #5 opened 8 years ago by jhcepas
  3