fedarko

fedarko's Stars

• python-openxml/python-docx

  Create and modify Word documents with Python

  Language:Python4.7k1471.2k1.1k

• pytest-dev/pytest-cov

  Coverage plugin for pytest.

  Language:Python1.8k42410212

• asweigart/pyperclip

  Python module for cross-platform clipboard functions.

  Language:Python1.7k35167200

• openjournals/joss

  The Journal of Open Source Software

  Language:Ruby1.6k85870187

• AllenDowney/ThinkPython

  Jupyter notebooks and other resources for Think Python by Allen Downey, published by O'Reilly Media.

  Language:Jupyter Notebook1.4k10426745

• zenodo/zenodo

  Research. Shared.

  Language:Python923421.4k242

• pysam-developers/pysam

  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

  Language:Cython79747932276

• ilanschnell/bitarray

  efficient arrays of booleans for Python

  Language:Python7282513298

• ewels/rich-click

  Format click help output nicely with rich.

  Language:Python642611738

• mdshw5/pyfaidx

  Efficient pythonic random access to fasta subsequences

  Language:Python464914575

• JoshData/pdf-diff

  A PDF comparison utility in Python.

  Language:Python461133469

• lh3/miniprot

  Align proteins to genomes with splicing and frameshift

  Language:C34186218

• blingenf/copydetect

  Code plagiarism detection tool

  Language:Python27741937

• lmdu/pyfastx

  a python package for fast random access to sequences from plain and gzipped FASTA/Q files

  Language:C27177123

• isitchristmas/web

  Main site.

  Language:JavaScript2551014266

• wwood/kingfisher-download

  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

  Language:Python25273438

• althonos/pyrodigal

  Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

  Language:Cython1467587

• marbl/ModDotPlot

  Language:Python125122110

• alignoth/alignoth

  Creating alignment plots from bam files

  Language:Rust563221

• louisabraham/pydivsufsort

  Python package for string algorithms ➰

  Language:Python394424

• kuangkzh/pylcs

  super fast cpp implementation of longest common subsequence/substring

  Language:C++24104

• CrumpLab/playjareyesores

  R functions to detect play jar eye sores

  Language:R151

• biocore/evident

  Language:Python141099

• biocore/qadabra

  Snakemake workflow for comparison of differential abundance ranks

  Language:Python136304

• biocore/zebra_filter

  Filtering out false taxonomic hits from shotgun sequencing based on genome coverage

  Language:Python7796

• hsmurali/SCRAPT

  SCRAPT: An Iterative Algorithm for Clustering Large 16S rRNA Gene Datasets

  Language:Jupyter Notebook7111

• hsmurali/PIRATE

  Phage Identification fRom Assembly-graph varianT Elements

  Language:Jupyter Notebook2200

• Shamir-Lab/3CAC

  Language:Java2200

• ZhangZhenmiao/GenomeDecoder

  Language:C++2100

• SimonHegele/pyfastg-oop

  Minimal Python library for parsing SPAdes FASTG files

  Language:Jupyter Notebook10