fmalmeida
I am just a fascinated bioinformatician who loves to learn.
University of Brasilia @compgenunb
Pinned Repositories
bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
easy_circos
easy_circos is a simple conda package that aims on rapidly and easily creating minimal circos configurations templates based on input data.
gff-toolbox
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
MpGAP
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
my_gifs
A repo to make my gifs acessible everywhere
ngs-preprocess
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
plot_nucmer
A simple script to run an alignment with nucmer and visualise its results.
pythonScripts
Repository to store my Python Scripts
rscripts
asc_seurat
fmalmeida's Repositories
fmalmeida/bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
fmalmeida/MpGAP
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
fmalmeida/ngs-preprocess
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
fmalmeida/easy_circos
easy_circos is a simple conda package that aims on rapidly and easily creating minimal circos configurations templates based on input data.
fmalmeida/gff-toolbox
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
fmalmeida/plot_nucmer
A simple script to run an alignment with nucmer and visualise its results.
fmalmeida/pythonScripts
Repository to store my Python Scripts
fmalmeida/rscripts
fmalmeida/my_gifs
A repo to make my gifs acessible everywhere
fmalmeida/sourmash-nf
Nextflow pipeline to run sourmash on input genomes
fmalmeida/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
fmalmeida/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
fmalmeida/custom_envs
saving some useful and fancy custom envs
fmalmeida/falmeida-x-meeting-2021
slides from x-meeting presentation
fmalmeida/fma_gh_actions
fmalmeida/fmalmeida
fmalmeida/genomeGTFtools
convert various features into a GFF-like file for use in genome browsers
fmalmeida/github-readme-stats
:zap: Dynamically generated stats for your github readmes
fmalmeida/minicurso_bioinfo_semabio_XX_UnB
fmalmeida/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
fmalmeida/nf-training-advanced
Customer workshop materials
fmalmeida/test_datasets
Small test datasets for my pipelines