fmalmeida
I am just a fascinated bioinformatician who loves to learn.
University of Brasilia @compgenunb
fmalmeida's Stars
taichi-dev/taichi
Productive, portable, and performant GPU programming in Python.
bbc/bbplot
R package that helps create and export ggplot2 charts in the style used by the BBC News data team
machulav/ec2-github-runner
On-demand self-hosted AWS EC2 runner for GitHub Actions
brentp/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
malonge/RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
bactopia/bactopia
A flexible pipeline for complete analysis of bacterial genomes
mamba-org/boa
The fast conda package builder, based on mamba
oushujun/LTR_retriever
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
apcamargo/genomad
geNomad: Identification of mobile genetic elements
huangnengCSU/compleasm
A genome completeness evaluation tool based on miniprot
TongZhou2017/itol.toolkit
Helper Functions for Interactive Tree Of Life (iTOL)
catppuccin/mdBook
🎊 Soothing pastel theme for mdBook
jameshadfield/phandango
an interactive viewer for populations of bacterial genomes linked by a phylogeny
gbouras13/dnaapler
Reorients assembled microbial sequences
hms-dbmi/chromoscope
Interactive multiscale visualization for structural variation in human genomes
mribeirodantas/NextflowSnippets
This repository hosts a large collection of Nextflow snippets
fulcrumgenomics/fqtk
Fast FASTQ sample demultiplexing in Rust.
gbouras13/plassembler
Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
ChongLab/Inspector
A tool for evaluate long-read de novo assembly results
tseemann/phastaf
Identify phage regions in bacterial genomes for masking purposes
HIT-ImmunologyLab/DBSCAN-SWA
jean-pierreBoth/gsearch
Approximate nearest neighbour search for microbial genomes based on hash metric
metagenlab/zDB
zDB: comparative bacterial genomics made easy
oschwengers/tadrep
Targeted Detection and Reconstruction of Plasmids
openpaul/fqless
less like viewer for fastq files
kangxiongbin/StrainXpress
StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high complexity metagenome sequencing data at strain resolution.
nf-wrap/main
Nextflow wrapper built around nf-core/modules
NorwegianVeterinaryInstitute/ALPPACA
A tooL for Prokaryotic Phylogeny And Clustering Analysis
katholt/orgspecAMR
Organism-specific interpretation of AMR genotypes
bogemad/trycycler_scripts
Scripts for genome assembly with trycycler