fmalmeida/ngs-preprocess

Issues

• SRA fetch and preprocess of illumina with FASTP hangs

  #42 opened 6 months ago by 0karl0
  3

• add nf-test

  #36 opened 7 months ago by fmalmeida
  1

• SRA NBCI fetch and preprossing script only works automatically for illumina sequences

  #40 opened 7 months ago by 0karl0
  7

• consider using porechop_abi

  #34 opened 8 months ago by fmalmeida
  1

• include the automatic generation of a samplesheet for MpGAP

  #32 opened 10 months ago by fmalmeida
  1

• Enhance documentation (paper review)

  #24 opened a year ago by fmalmeida
  1

• Add example of non-bacterial dataset analysis (paper review)

  #25 opened a year ago by fmalmeida
  2

• Update NanoPack tools alternatives

  #26 opened a year ago by fmalmeida
  0

• add citation information

  #21 opened a year ago by fmalmeida
  0

• fix bam2fastq source code

  #18 opened 2 years ago by fmalmeida
  1

• update module to fetch data from sra

  #19 opened 2 years ago by fmalmeida
  0

• Suggestion for hybrid error correction

  #13 opened 3 years ago by tuannguyen8390
  1

• standard profile to not load docker

  #10 opened 3 years ago by fmalmeida
  0

• change structure of output directory

  #7 opened 3 years ago by fmalmeida
  3

• change to bioconda images

  #5 opened 3 years ago by fmalmeida
  2

• new tool for long reads QC

  #4 opened 3 years ago by fmalmeida
  0

• Change software for filtering longreads

  #2 opened 3 years ago by fmalmeida
  0

• Add more parallel jobs

  #1 opened 4 years ago by fmalmeida
  1