fmalmeida/ngs-preprocess

fix bam2fastq source code

fmalmeida opened this issue · 1 comments

fmalmeida commented

PacBio has changed the location of the many of its tools, including bam2fastx that is now in a different conda package.
https://github.com/pacificbiosciences/pbtk/

The reason of this ticket is to update references and from where the pipeline fetches the code to be able to use the latest.

fmalmeida commented

Source code has been changed in dev.