Pinned Repositories
BiGG_SABIO
A module to acquire reaction kinetics data from SABIO-RK for any BiGG model
Biochemical-databases
The codes for collecting, aggregating, and exporting databases is provided.
ChemW
A rigorous software for determining the molecular weight of minerals, chemicals, and peptides
dGPredictor
ModelSEEDpy
Python package for building and analyzing models using ModelSEED
opentecr
openTECR database curation
PDIpy
A software that simulates photodynamic inactivation of a coccus bacterium
PHREEQC
PHREEQC simulation code for RO desalination fluidics
ProjectNotebooks
Repository for Jupyter notebooks and associated data for various research projects of the ModelSEED team
ROSSpy
Reverse Osmosis Simulation Software
freiburgermsu's Repositories
freiburgermsu/ROSSpy
Reverse Osmosis Simulation Software
freiburgermsu/ChemW
A rigorous software for determining the molecular weight of minerals, chemicals, and peptides
freiburgermsu/BiGG_SABIO
A module to acquire reaction kinetics data from SABIO-RK for any BiGG model
freiburgermsu/ModelSEEDpy
Python package for building and analyzing models using ModelSEED
freiburgermsu/opentecr
openTECR database curation
freiburgermsu/PDIpy
A software that simulates photodynamic inactivation of a coccus bacterium
freiburgermsu/PHREEQC
PHREEQC simulation code for RO desalination fluidics
freiburgermsu/dGPredictor
freiburgermsu/ProjectNotebooks
Repository for Jupyter notebooks and associated data for various research projects of the ModelSEED team
freiburgermsu/ANME
freiburgermsu/cobrakbase
KBase Interface for COBRApy
freiburgermsu/cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
freiburgermsu/codons
A Python module that translates DNA and RNA nucleotide sequences into the sequences of the encodes set of proteins.
freiburgermsu/CommPhitting
freiburgermsu/CommScores
freiburgermsu/cv
freiburgermsu/dFBApy
A Dynamic Flux Balance Analysis package for computational biology
freiburgermsu/hillfit
Fitting the Hill Equation to Experimental Data
freiburgermsu/MASc_thesis
freiburgermsu/MetabolicMC_Supplementary_Git_v1
Code, examples, and publication details for the application of Molecular Communications to cellular metabolism
freiburgermsu/microbial_interactions
freiburgermsu/ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
freiburgermsu/MutualInformationAnalysisModule
freiburgermsu/nmrglue
A module for working with NMR data in Python
freiburgermsu/organiclinks-v2
freiburgermsu/protein_structure_hackathon
Hackathon repo for 11/28-11/30
freiburgermsu/readthedocs_template
freiburgermsu/SciCompforChemists
Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.
freiburgermsu/watertap
The WaterTAP development repository
freiburgermsu/WCMpy
A Python package for Whole-Cell simulations