gbouras13
Bioinformatics, University of Adelaide. Phages, microbes and more. george.bouras@adelaide.edu.au
Adelaide, SA
Pinned Repositories
coatofarms
ONT Long-read 16S Snakemake pipeline using Emu
dnaapler
Reorients assembled microbial sequences
hybracter
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
megapharokka
A fork of Pharokka to handle enVhogs
Nanopore_Bacterial_Assembly_Pipeline
Pipeline to assemble many bacterial assemblies from Nanopore data
pharokka
fast phage annotation program
phold
Phage Annotation using Protein Structures
plassembler
Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
pypolca
Standalone Python re-implementation of the POLCA polisher from MaSuRCA
Useful_Scripts
Collection of Useful Scripts
gbouras13's Repositories
gbouras13/Nanopore_RNA_Seq_cdna_Pipeline
gbouras13/General_RNA_Seq_Pipeline
Pipeline to Generate TPM Counts using RNA Seq data using STAR, Salmon and Kallisto
gbouras13/Phicore
work in progress. but got to do with phage genomes because they are awesome!
gbouras13/RNA_Seq_Deconv_Pipeline
gbouras13/S_Aureus_Insertion_Seqs_Pipeline
Pipeline for Pan-Genomic Analysis of s aureus isolates
gbouras13/S_Aureus_Methylation
Pipeline to Detect S Aureus Methylation