gbouras13/hybracter

Issues

• Can this program be run on an external hard drive?

  #83 opened 3 months ago by JavierFFavieres
  4

• [BUG] Problem in coverage information

  #82 opened 2 months ago by CorentinEscobar
  2

• [BUG] hybracter install problem

  #80 opened 2 months ago by gaworj
  2

• [Feature request] Automatic Dnaapler fall-back or adjustable Dnaapler --evalue param

  #81 opened 3 months ago by richardstoeckl
  1

• add latest medaka models

  #84 opened 2 months ago by vdejager
  1

• Error: the assembly_1 and assembly_2 assemblies need to contain the same number of sequences

  #78 opened 4 months ago by rukjis
  1

• [Feature request]

  #77 opened 4 months ago by oschwengers
  0

• New parameter pointing to the raw data

  #76 opened 4 months ago by oschwengers
  0

• [BUG] No plasmid in final output

  #74 opened 5 months ago by CorentinEscobar
  4

• snakemake incompatible to the provided slurm profile

  #55 opened 7 months ago by zhanxw
  3

• Update medaka models to include 4.3.0 models

  #71 opened 5 months ago by samuelmontgomery
  1

• How contamination-sensitive is hybracter?

  #64 opened 6 months ago by stas-malavin
  2

• Failed to run medaka consensus

  #63 opened 6 months ago by monty357penguin
  2

• Error in rule medaka_incomplete

  #62 opened 6 months ago by damientully
  9

• [BUG] Possible to have hybracter install its own copy of mamba?

  #59 opened 6 months ago by rzelle-lallemand
  4

• [Feature request] Addding the option to write the database to a specific directory

  #60 opened 6 months ago by npbhavya
  2

• [BUG] Pipeline breaks when '--skip_qc' is chosen

  #51 opened 6 months ago by wanyuac
  3

• [BUG] Medaka failure on MacOS

  #56 opened 7 months ago by andreagp96
  2

• Error calling blastx

  #54 opened 8 months ago by kuzman1306
  8

• allow specifying phage in dnaapler (or other dnaaper arguments for the choice of start gene)

  #38 opened 8 months ago by splaisan
  1

• [BUG] mash not found

  #44 opened 8 months ago by CorentinEscobar
  12

• [BUG] Polypolish failed in the test run

  #49 opened 8 months ago by wanyuac
  3

• [Feature request] Download all medaka models with test-long (and test-hybrid)?

  #48 opened 8 months ago by lxsteiner
  1

• [plassembler long] canu installed, but canu not found

  #45 opened 8 months ago by lxsteiner
  10

• [BUG] Add required channels to install instructions/documentation

  #40 opened 8 months ago by ammaraziz
  2

• DOC: typo for test commands

  #36 opened 9 months ago by splaisan
  1

• Dnaapler custom DB

  #18 opened a year ago by simone-pignotti
  3

• fastp outputs in current working directory

  #16 opened a year ago by simone-pignotti
  2

• BWA index bug + missing folder for ALE sam outputs

  #13 opened a year ago by simone-pignotti
  1

• Wrong variable name

  #9 opened a year ago by simone-pignotti
  3

• Estimate genome size

  #1 opened a year ago by gbouras13
  1