geneontology/amigo

Issues

• Add taxon constraints to display (redux)

  #721 opened 4 months ago by kltm
  0

• Taxon info displays "none" when there are constraints

  #712 opened 4 months ago by suzialeksander
  25

• Annotation filter GO class (direct) not working

  #718 opened 7 months ago by raymond91125
  9

• Filter annotations by evidence is not working

  #716 opened 9 months ago by vanaukenk
  16

• Evidence filters no longer working

  #717 opened 9 months ago by kltm
  2

• Remove stats page from AmiGO

  #715 opened a year ago by ValWood
  5

• Closure should be used when querying the genes biotype

  #713 opened a year ago by cmungall
  2

• searching on gene name

  #714 opened a year ago by ValWood
  2

• Update dates on AmiGO

  #711 opened a year ago by pgaudet
  1

• Support node > 8

  #710 opened a year ago by nathanweeks
  1

• Change "data health" to "feedback" on ontology pages

  #709 opened a year ago by kltm
  1

• Remove link to GOnuts

  #707 opened a year ago by pgaudet
  2

• Display logical definitions and reaction participants in AmiGO

  #706 opened a year ago by pgaudet
  15

• Definitions of molecular_function and cellular_component do not match in AmiGO and QuickGO

  #705 opened a year ago by addiehl
  4

• BUG when including "regulates"

  #702 opened a year ago by ValWood
  2

• Add update pathway widget to AmiGO (prod)

  #694 opened a year ago by kltm
  3

• Searching AmiGO by PubMed ID

  #638 opened 3 years ago by ValWood
  7

• Make PMID search more visible

  #701 opened a year ago by kltm
  2

• 'Download' should be a real downlod

  #651 opened a year ago by pgaudet
  1

• Switch AmiGO production to master once refactored GO API is in production

  #696 opened a year ago by kltm
  2

• Improve amigo xrefs page to better clarify the nature of the synonyms

  #697 opened a year ago by kltm
  1

• Rationalize main production and noctua / NEO autocomplete index creation (and codebase)

  #693 opened a year ago by kltm
  0

• Term matrix issue

  #692 opened a year ago by Antonialock
  2

• Syntax error in load_ontology_purge_safe

  #690 opened a year ago by nathanweeks
  3

• Give feedback on improvements or changes necessary for AmiGO use case of pathway widget

  #679 opened a year ago by kltm
  7

• Add a top-level /model/ route to AmiGO and populate it with pathway widget and model metadata

  #678 opened a year ago by kltm
  1

• Add "model" tab to gene product pages

  #677 opened a year ago by kltm
  4

• Need redirects from old http to new https pages

  #689 opened a year ago by pgaudet
  5

• In some environments, the xrefs page (Xrefs.pm) fails with a server error

  #688 opened 2 years ago by kltm
  1

• Add data download to matrix tool

  #684 opened 2 years ago by kltm
  5

• Filter for large facet sets has disappeared

  #686 opened 2 years ago by kltm
  1

• Reference page not correctly displaying article title.

  #655 opened 2 years ago by malcolmfisher103
  8

• Add GO-CAMs tab to term pages

  #683 opened 2 years ago by pkalita-lbl
  2

• XSS vulnerability in search (medial_search) with q parameter

  #682 opened 2 years ago by kltm
  3

• Refresh the build system in AmiGO to better support modern JS/widgetry

  #676 opened 2 years ago by kltm
  2

• Experiment: take a look at generating a limited ontology for AmiGO load

  #672 opened 2 years ago by kltm
  1

• load_details pages no longer display any information

  #675 opened 2 years ago by kltm
  0

• Experiment: take a look at scope of general index use and how it is wired in

  #671 opened 2 years ago by kltm
  5

• confusing search results

  #649 opened 2 years ago by ValWood
  5

• Amigo often supplies non-GO terms (confusing for users)

  #667 opened 2 years ago by ValWood
  1

• AmiGO stats count differently than geneontology.org and release.go statistics

  #661 opened 2 years ago by suzialeksander
  1

• PMID eutilities has changed their API breaking AmiGO pub pages

  #657 opened 2 years ago by cmungall
  2

• XSS vulnerability in visualize

  #653 opened 3 years ago by kltm
  2

• Gauge amount of work necessary to embed AGR pathway and/or ribbon widgets into AmiGO

  #650 opened 3 years ago by kltm
  8

• term matrix should report counts for genes in aspect that do not slim up

  #648 opened 3 years ago by cmungall
  1

• Possible self-XSS vulnerability in matrix tool

  #647 opened 3 years ago by kltm
  0

• AmiGO browse not showing number of annotations anymore

  #639 opened 3 years ago by pgaudet
  4

• Untraceable annotation for ZDB-GENE-060818-1

  #626 opened 3 years ago by pgaudet
  7

• Refresh interface for term pages to allow switching relation closures

  #634 opened 3 years ago by kltm
  12

• Add templated link for regulates closure in context of isa_partof world

  #625 opened 3 years ago by kltm
  4