functional-annotation
There are 55 repositories under functional-annotation topic.
eggnogdb/eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
metagenome-atlas/atlas
ATLAS - Three commands to start analyzing your metagenome data
geneontology/go-ontology
Source ontology files for the Gene Ontology
xihaoli/STAAR
An R package for performing STAAR procedure in whole-genome sequencing studies
moshi4/COGclassifier
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
xihaoli/STAARpipeline
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
geneontology/noctua
Graph-based modeling environment for biology, including prototype editor and services
geneontology/go-annotation
This repository hosts the tracker for issues pertaining to GO annotations.
iquasere/UPIMAPI
UniProt Id Mapping through API
geneontology/amigo
AmiGO is the public interface for the Gene Ontology.
xihaoli/STAARpipeline-Tutorial
The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
iquasere/reCOGnizer
A tool for domain based annotation with databases from the Conserved Domains Database
xihaoli/MetaSTAAR
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
geneontology/helpdesk
The Gene Ontology Helpdesk
dalmolingroup/euryale
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
corbinq/GAMBIT
Tool for integrative gene-based association analysis using GWAS summary stats
xihaoli/STAARpipelineSummary
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
Dill-PICL/GOMAP-singularity
GOMAP-Singularity is the containerized version of GOMAP
xihaoli/MultiSTAAR
An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
Bohdan-Khomtchouk/geneXtendeR
R/Bioconductor package for optimized functional annotation of ChIP-seq data
parfreylab/metagenome_assembly_pipeline
A pipeline to go from raw sequencing data to high quality bins and pretty plots.
xihaoli/MACIE
Multi-dimensional Annotation Class Integrative Estimation
li-lab-genetics/staarpipeline-rap
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
sagnikbanerjee15/fungal_genome_assemblies_and_annotation
Analysis workflow to generate fungal assemblies, generate gene structural and functional annotations
sigven/geneOncoX
Human gene annotations for the oncology domain
geneontology/paint
This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.
geneontology/ribbon
(DEPRECATED) Short form matrix view of all GO annotations for a given gene
jungsoh/transcriptomics-course
Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining
li-lab-genetics/favorannotator-rap
An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP
li-lab-genetics/MetaSTAARlite
A lightweight R package for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using MetaSTAARlite pipeline
MuhammadMuneeb007/EFGPP
Exploratory Framework for Genotype-Phenotype Prediction
li-lab-genetics/staarpipelinesummary_varset-rap
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
narek01/DAVIDpy
Python3 extension for DAVID Bioinformatics Tool
xpolak37/COGtools
A computational tools for improving the functional annotation of bacterial genomes and the classification of CDSs into cllusters of orthologous groups (COGs). It allows summarizing annotations from different resources to provide a more accurate annotation of genes regarding their assignment into COGs and their categories.
li-lab-genetics/staarpipelinesummary_indvar-rap
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP