genomewalker

genomewalker's Stars

• Experience-Monks/math-as-code

  a cheat-sheet for mathematical notation in code form

  15.2k406481.1k

• ropensci/drake

  An R-focused pipeline toolkit for reproducibility and high-performance computing

  Language:R1.3k351.1k129

• ropensci/skimr

  A frictionless, pipeable approach to dealing with summary statistics

  Language:HTML1.1k3226580

• steineggerlab/foldseek

  Foldseek enables fast and sensitive comparisons of large structure sets.

  Language:C86218355104

• hrbrmstr/waffle

  :maple_leaf: Make waffle (square pie) charts in R

  Language:R778297194

• jlmelville/uwot

  An R package implementing the UMAP dimensionality reduction method.

  Language:R3282111331

• jeffdaily/parasail

  Pairwise Sequence Alignment Library

  Language:C246189734

• CartoDB/CartoColor

  CartoColors as a node module

  Language:TypeScript224122717

• soedinglab/metaeuk

  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

  Language:C18099023

• bluenote-1577/skani

  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

  Language:Rust17753010

• althonos/pyrodigal

  Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

  Language:Cython1467577

• ropensci-archive/umapr

  :no_entry: ARCHIVED :no_entry: Wraps UMAP Algorithm for Dimension Reduction

  Language:R112152516

• brianhie/evolocity

  Evolutionary velocity with protein language models

  Language:Python8461220

• biocore/gemelli

  Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

  Language:Python7877417

• ToniWestbrook/paladin

  Protein Alignment and Detection Interface

  Language:C6111418

• RAHenriksen/NGSNGS

  NGSNGS: Next generation simulator for next generation sequencing data

  Language:C++515176

• rnajena/bertax

  Taxonomic classification of DNA sequences

  Language:Python503198

• jmonlong/Hippocamplus

  A place to gather useful information I keep on forgetting.

  Language:HTML305718

• wtmatlock/flanker

  Gene-flank analysis tool

  Language:Python264318

• DeepRank/PSSMGen

  Generates consistent PSSM and/or PDB files for protein-protein complexes

  Language:Python193145

• ctlab/metacherchant

  Language:Java181179

• nick-youngblut/MGSIM

  Metagenome read simulation of multiple synthetic communities

  Language:Python9150

• InaMariaDeutschmann/EnDED

  EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.

  Language:C++8142

• unipept/FragGeneScanPlusPlus

  Scalable high-throughput short-read open reading frame prediction

  Language:C7603

• Bismarrck/tensoralloy

  Tensor-graph based machine learning framework for metal alloys.

  Language:Tcl6200

• metaDMG-dev/metaDMG-core

  metaDMG

  Language:Python62195

• k-melnyk/graphKKE

  Library for the analysis of time-evolving graphs

  Language:C++5300

• maxibor/adrsm

  Ancient DNA Read Simulator for Metagenomic

  Language:HTML5241

• k-melnyk/deep-metastability

  Language:Python4300

• kamimrcht/BCT

  BCool Trans

  Language:C++2410