Pinned Repositories
10x-cd45-isoform-quantification
CLUMPS-PTM
CLUMPS adapted to post-translational modifications.
CPTAC_PanCan_PTM_2023
dalmatian
dalmatian is a collection of high-level companion functions for Firecloud and FISS.
deTiN
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
Haradhvala_et_al_2022
MutSig2CV
MutSig2CV from Lawrence et al. 2014
rnaseqc
Fast, efficient RNA-Seq metrics for quality control and process optimization
scrinvex
Single Cell RNA Intron-Exon counting
SignatureAnalyzer
Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
getzlab's Repositories
getzlab/scrinvex
Single Cell RNA Intron-Exon counting
getzlab/pathway_based_biomarker
getzlab/lapdog
A python module, CLI, and browser-based UI to run jobs outside of Firecloud
getzlab/demo_wolf_flow
getzlab/gcp-vm-tracker
A dashboard for accessing GCP compute instances across different projects
getzlab/hound
A FireCloud database extension
getzlab/slurm-gcp
Slurm on Google Cloud Platform
getzlab/smk-m2
gatk best practice workflow for mutect2 and beyond
getzlab/wolF_Mutect2
somatic variation calling pipeline with GATK Mutect2 in wolF