Pinned Repositories
auth-service
Authentication service for the GHGA data portal used by the API gateway via the ExtAuth protocol
datameta
A submission server for data and associated metadata
ghga-metadata-schema
Metadata schema for the German Human Genome-Phenome Archive (GHGA)
ghga-service-chassis-lib
A library that contains the basic chassis functionality used in services of GHGA
hexkit
A chassis library for building domain-focused, infrastructure-agnostic and event-driven microservices in Python.
metadata-catalog
nf-aceseq
a Nextflow ACE-Seq calling and annotation pipeline based on DKFZ-ODCF/ACEseqWorkflow
nf-platypusindelcalling
This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ
sandbox-storage
An implementation of the GA4GH DRS specs for controlled access to files on S3.
schemapack
Make your JSON Schemas sociable and create linked data model.
GHGA - The German Human Genome-Phenome Archive's Repositories
ghga-de/ghga-metadata-schema
Metadata schema for the German Human Genome-Phenome Archive (GHGA)
ghga-de/hexkit
A chassis library for building domain-focused, infrastructure-agnostic and event-driven microservices in Python.
ghga-de/auth-service
Authentication service for the GHGA data portal used by the API gateway via the ExtAuth protocol
ghga-de/docs.ghga.de
GHGA User Documentation
ghga-de/ghga-datasteward-kit
GHGA-internal scripts to be used by data stewards.
ghga-de/homogeneous-data-processing
ghga-de/metldata
A framework for handling metadata based on ETL, CQRS, and event sourcing.
ghga-de/nf-platypusindelcalling
This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ
ghga-de/nf-snvcalling
a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow
ghga-de/data-portal-ui
GHGA Data Portal v1
ghga-de/epic-docs
Documentation and plans for service development milestones
ghga-de/gh-action-common
ghga-de/ghga-connector
CLI - Client to perform up- and download operations to and from a local ghga instance
ghga-de/mass
A service for searching metadata artifacts and filtering results.
ghga-de/microservice-repository-template
A template for Python-based microservice repositories with continuous update delivery.
ghga-de/access-request-service
ghga-de/beacon2-ri-api
This is the v2 Beacon Reference Implementation deployed at GHGA. For the base implementation please see https://github.com/EGA-archive/beacon2-ri-api/
ghga-de/charts
ghga-de/data-portal
GHGA Data Portal v2
ghga-de/dataset-information-service
ghga-de/example-data
GHGA Example Data
ghga-de/file-services-backend
ghga-de/gh-action-ci
Common steps executed within CI pipelines of GHGA.
ghga-de/ghga-service-commons
ghga-de/ghga-transpiler
ghga-de/notification-orchestration-service
ghga-de/notification-service
ghga-de/state-management-service
ghga-de/well-known-value-service
ghga-de/work-package-service
Service that handles work packages for the CLI client