ghga-de/nf-platypusindelcalling

Issues

• add nf-test

  #41 opened 2 months ago by kubranarci
  0

• add nf-prov

  #39 opened 2 months ago by kubranarci
  1

• generete contig from bam not fai

  #36 opened 7 months ago by kubranarci
  0

• [FEATURE] Remove FREQ based FILTERing and move it as an annotation

  #35 opened 7 months ago by NagaComBio
  2

• FILTER 'MQ' is not defined in the header

  #33 opened 7 months ago by kubranarci
  0

• tries conda env build even for singularity runs

  #32 opened 7 months ago by kubranarci
  2

• Output proper vcf

  #17 opened 7 months ago by kubranarci
  1

• check out fasta.contains

  #30 opened 10 months ago by kubranarci
  0

• add .gitpod.yml

  #29 opened 10 months ago by kubranarci
  0

• test slurm

  #28 opened 10 months ago by kubranarci
  0

• fix annotation file input

  #24 opened a year ago by kubranarci
  0

• Update documentation

  #23 opened a year ago by kubranarci
  8

• Extent CI test to the whole pipeline

  #14 opened a year ago by kubranarci
  0

• Replace annovar with VEP or SNPeff

  #15 opened a year ago by kubranarci
  0

• Generate annotation files for test case

  #13 opened a year ago by kubranarci
  0

• fix input checking

  #16 opened a year ago by kubranarci
  0

• CI/CD Test integration

  #10 opened a year ago by kubranarci
  1