gkiar
openly-reproducible-and-accessibly-scalable-science-enthusiast. Ph.D. in Biomedical Engineering, Research Scientist @ChildMindInstitute
Child Mind InstituteMontreal, Quebec
Pinned Repositories
boutiques
A cross-platform descriptive command-line framework for applications
clowdr
Command-line utility for iteratively developing pipelines, deploying them at scale, and sharing data and derivatives
3d-cnn-ae
3D Convolutional Siamese AutoEncoder for learning fMRI parameteric maps
gitmarklet
gitmarklet: Brief summaries of scientific papers I've read indexed via Github Issues
gkiar.github.io
Personal website for Greg Kiar
jhu-bme
EN.580.422: Systems Bioengineering II
2021AggregateMCA
Evaluating various aggregation methods for MCA-perturbed datasets
2021ImpactOfInstability
fuzzy
A fuzzy ecosystem for evaluating the stability of your computational tools.
gkiar's Repositories
gkiar/gkiar.github.io
Personal website for Greg Kiar
gkiar/cv
my curriculum vitae
gkiar/hcp-ndmg-connectomes
Instructions for running HCP data with ndmg (functional and diffusion) on AWS with Clowdr/Boutiques
gkiar/stability-impact
gkiar/abcd_analysis
Sandbox for scripts and data grooming utils developed to simplify working with ABCD data
gkiar/actigraphy
Sandbox for actigraphy data analysis
gkiar/ancp-bids
A Python package to read/write/query/validate BIDS datasets.
gkiar/atom
:atom: The hackable text editor
gkiar/b7filemove
Utility to crawl and convert files in the B7 Google Drive
gkiar/bids-statsmodels-design-synthesizer
This is a prototype to explore the possibility of creating self-contained tool to perform the data aggregation necessary to jump from events.tsv files/model.json/other time series metadata to a design matrix (or an appropriate sparse precursor of the design matrix).
gkiar/boutiques
JSON schema and tools for boutiques application descriptors.
gkiar/C-PAC
Configurable Pipeline for the Analysis of Connectomes
gkiar/coding-standards-certification
gkiar/cpac
A convenience wrapper for https://github.com/FCP-INDI/C-PAC that provides a simple command line interface.
gkiar/CPAC-Development
gkiar/CPAC_regtest_pack
gkiar/cpe
considering pipeline effects
gkiar/fslwrappers
gkiar/fuzzy
A fuzzy ecosystem for evaluating the stability of your computational tools.
gkiar/fuzzy-c-pac
gkiar/fuzzy-neurotools
Comparing tool variability and numerical variability in fMRI analyses results
gkiar/GGIR
Code corresponding to R package GGIR
gkiar/HCPStructuralMaps
Scripts for grabbing HCP data, extracting individual parcellations, and generating connectomes from them.
gkiar/minimal-mistakes
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
gkiar/nda-abcd-s3-downloader
Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.
gkiar/nmind.github.io
NMIND website
gkiar/perturbwhat
Comparison of data augmentation strategies via perturbations introduced at various points in the pipeline.
gkiar/pybids
Python package to access BIDS datasets
gkiar/stability
Evaluating the stability of processed neuroimaging derivatives with respect to data and parameter perturbations.
gkiar/verificarlo
A tool for automatic Montecarlo Arithmetic analysis.