gkiar
openly-reproducible-and-accessibly-scalable-science-enthusiast. Ph.D. in Biomedical Engineering, Research Scientist @ChildMindInstitute
Child Mind InstituteMontreal, Quebec
Pinned Repositories
boutiques
A cross-platform descriptive command-line framework for applications
clowdr
Command-line utility for iteratively developing pipelines, deploying them at scale, and sharing data and derivatives
3d-cnn-ae
3D Convolutional Siamese AutoEncoder for learning fMRI parameteric maps
gitmarklet
gitmarklet: Brief summaries of scientific papers I've read indexed via Github Issues
gkiar.github.io
Personal website for Greg Kiar
jhu-bme
EN.580.422: Systems Bioengineering II
2021AggregateMCA
Evaluating various aggregation methods for MCA-perturbed datasets
2021ImpactOfInstability
fuzzy
A fuzzy ecosystem for evaluating the stability of your computational tools.
gkiar's Repositories
gkiar/BIDS-json
BIDS in JSON
gkiar/boutiques-paper
A report describing the Boutiques system.
gkiar/boutiques.github.io
Boutiques website
gkiar/boutiquesCreator
for @gkiar
gkiar/brainhackorg.github.io
brainhack events webpage
gkiar/cbrain
CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.
gkiar/cbrain_bids_apps_runner
gkiar/evadyer.github.io
Personal page for Eva Dyer
gkiar/example
This an example app that can serve as a template.
gkiar/gigantum-cli
Simple user-facing CLI for the Gigantum Platform
gkiar/jb-course-plan
gkiar/knorR
R bindings for knor
gkiar/memory_profiler
Monitor Memory usage of Python code
gkiar/mindboggle
gkiar/ndmg
NeuroData's MRI Graphs (ndmg) - structural connectome estimation package and pipeline
gkiar/ndmg-bids-app
BIDS app for NeuroData's MRI to Graphs pipeline
gkiar/ndmg-boutiques
boutiques descriptors for neurodata tools
gkiar/neurolinks
Links to Neuroscience tools, portals, initiatives, and more!
gkiar/nipype_boutiques
gkiar/pixbincodec
A encoder/decoder for the PixBin format. Extends further than PixpipeJS native types.
gkiar/python-packaging
Tutorial on how to structure Python packages
gkiar/qbatch
gkiar/s3fs-fuse
FUSE-based file system backed by Amazon S3
gkiar/scipy-lecture-notes
Tutorial material on the scientific Python ecosystem
gkiar/sic
Repository for extensible scientific container paper
gkiar/sim
A set of MapReduce programs to process brain images
gkiar/simple-subtask
Simple app which creates (1) `.cbid` files according to the subtask schema, and (2) prints a `pwd` as the subtask
gkiar/singularity-travis
Establishing a vanilla configuration for running singularity containers within Travis CI
gkiar/sleepy
An out-of-the-box RESTful API for querying arbitrary data organizations
gkiar/slurmpy
submit jobs to slurm with quick-and-dirty python