Pinned Repositories
argparse_dataclass
Declarative CLIs with argparse and dataclasses
augur
Pipeline components for real-time phylodynamic analysis
aws-elastic-beanstalk-cli
The EB CLI is a command line interface for Elastic Beanstalk that provides interactive commands that simplify creating, updating and monitoring environments from a local repository.
BayesianMethods
BioD
Bioinformatics library in D. (utils for working with SAM, BAM, SFF formats)
canu
A single molecule sequence assembler for genomes large and small.
fastq_compression_comparison
Creating a simple Docker image to help perform comparisons for FASTQ compression
pybgen
Python module to process BGEN files as dosage data
sparseMEM-big
Big-genome modification to sparseMEM from Khan et al.
Suns
Suns Structural Search
godotgildor's Repositories
godotgildor/fastq_compression_comparison
Creating a simple Docker image to help perform comparisons for FASTQ compression
godotgildor/canu
A single molecule sequence assembler for genomes large and small.
godotgildor/pybgen
Python module to process BGEN files as dosage data
godotgildor/argparse_dataclass
Declarative CLIs with argparse and dataclasses
godotgildor/augur
Pipeline components for real-time phylodynamic analysis
godotgildor/aws-elastic-beanstalk-cli
The EB CLI is a command line interface for Elastic Beanstalk that provides interactive commands that simplify creating, updating and monitoring environments from a local repository.
godotgildor/BioD
Bioinformatics library in D. (utils for working with SAM, BAM, SFF formats)
godotgildor/bwa-mem2
The next version of bwa-mem (WIP; not recommended for production uses at the moment)
godotgildor/cas-offinder
An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
godotgildor/cdna-display-proteolysis-pipeline
godotgildor/cpython
The Python programming language
godotgildor/DnaChisel
:pencil2: A versatile DNA sequence optimizer
godotgildor/dnanexus
godotgildor/editdistance
Fast implementation of the edit distance(Levenshtein distance)
godotgildor/hi-c-scaffold
SALSA: A tool to scaffold long read assemblies with Hi-C data
godotgildor/learning-jenkins-3003221
Learning Jenkins
godotgildor/Mash
Fast genome and metagenome distance estimation using MinHash
godotgildor/mohrs_circle
Example Streamlit code for Mohrs Circle
godotgildor/parliament2
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
godotgildor/pre-commit
A collection of pre-commit hooks used by Gruntwork tools
godotgildor/pycoQC
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
godotgildor/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
godotgildor/Ribbon
Long read visualizer for genomics created using D3
godotgildor/sambamba
Tools for working with SAM/BAM data
godotgildor/side-projects
Miscellaneous code for side projects
godotgildor/Slurm4Azure
Deploy Slurm Workload Manager on Ubuntu to Microsoft Azure
godotgildor/SnpSift
godotgildor/Unipressed
Comprehensive Python client for the Uniprot REST API
godotgildor/urban-octo-palm-tree
godotgildor/viral-ngs
Viral genomics analysis pipelines