We need testing around ploidy
LiterallyUniqueLogin opened this issue · 1 comments
LiterallyUniqueLogin commented
Which tools can handle haploid data? (GangSTR is one)
Are any of these tools not human specific and can handle ploidy >2?
For those cases we should add test cases to confirm our tools don't crash so we have issues like #89 crop up.
gymreklab commented
HipSTR has an option --haploid-chrs to specify a chromosome as haploid. ExpansionHunter has an --sex option which I assume is used for ploidy of sex chromosomes. Agree we should add at least haploid/diploid example data files and to tests. I am not aware of any of these outputting ploidy >2.