habi
Working father, generic geek and ex-messenger with a PhD in ultrahigh resolution tomography. I love the outdoors, taking photos and much more.
Institute of Anatomy, Unversity of Bern, SwitzerlandBern, Switzerland
Pinned Repositories
acinar-analysis-manuscript
EAWAG-manuscript
A small manuscript on the preparation and tomographic scanning of a corpus of cichlids from the EAWAG. And a bit on the treatment of the data.
GlobalDiagnostiX
Code and stuff written for my work on http://globaldiagnostix.org/
latex
Some LaTeX code snippets I've hacked together over the years.
latex-test
Results (automatically) in http://habi.github.io/latex-test/main.pdf
Lecture.Microtomography
A lecture on (micro)tomography
OpenSCAD
A collection of OpenSCAD models; stuff to fix private 'issues' and gifts
PhD-Thesis
My PhD-Thesis, copied from the virtual SVN-server I installed at the Institute of Anatomy of the University of Bern in Switzerland and migrated to git.
Zebra-Fish-Gills
Analysis for https://doi.org/10.1371/journal.pone.0228333
zmk-tooth-cohort
Scanning +100 teeth with our sample changer
habi's Repositories
habi/latex-test
Results (automatically) in http://habi.github.io/latex-test/main.pdf
habi/zmk-tooth-cohort
Scanning +100 teeth with our sample changer
habi/EAWAG-manuscript
A small manuscript on the preparation and tomographic scanning of a corpus of cichlids from the EAWAG. And a bit on the treatment of the data.
habi/Talk.2022.MICResearchDay
My presentation for the https://www.mic.unibe.ch/events/past_mic_events/mic_research_day_2022/
habi/catalog
Made with Manubot catalog (please add your manuscript!!)
habi/EAWAG
Preparing the scans of several fishes for display
habi/monica
Personal CRM. Remember everything about your friends, family and business relationships.
habi/camera-motion-detector
Uses opencv to detect when a camera is panning or zooming.
habi/campsitemap
Detailed map of campsite
habi/Chondrules
Jupyter notebooks to look at and fiddle with the tomographic scans we performed for http://nccr-planets.ch/
habi/dask-examples
Easy-to-run example notebooks for Dask
habi/element-x-ios
habi/gaia
OSM.org Redesign
habi/gcp-osm
Ground Control Points for OpenStreetMap
habi/genana_py
habi/IME
Image Metadata Enhancer (IME) enhances metadata on photos using reverse geocoding and various other techniques, populating the IPTC metadata fields.
habi/innenhof
Die Aussicht in den Innenhof
habi/jahresrueckblick
Stuff for my end-of-year review blog posts.
habi/opening_hours.js
Library to parse and process the opening_hours tag from OpenStreetMap data
habi/OpenStop
App for collecting OpenStreetMap-compliant accessibility data in public transport
habi/osm-admin-boundary-conflation
habi/osm-lump-ways
Group OSM ways together based on topology & tags
habi/scipy-lecture-notes
Tutorial material on the scientific Python ecosystem
habi/srz_how_to_osm
Eine Anleitung wie man in OSM einsteigen kann, am Beispiel einer Feuerwehr
habi/Talk.2023.COMULIS
My talk for https://www.ana.unibe.ch/continuing_education/comulis_training_school/
habi/Talk.2023.SHTSymposium
My talk for the 2023 Symposium of the Schweizerische Gesellschaft für Histologie-Technik
habi/Tutorials
SlicerMorph module tutorials
habi/vaguely-rude-places
The map of Vaguely Rude Place Names
habi/web
OsmAnd Web project
habi/Zebrafish-Muscle-Volume
Detecting changes in muscle volume of zebrafishes. From tomographic scans.