habi
Working father, generic geek and ex-messenger with a PhD in ultrahigh resolution tomography. I love the outdoors, taking photos and much more.
Institute of Anatomy, Unversity of Bern, SwitzerlandBern, Switzerland
Pinned Repositories
acinar-analysis-manuscript
EAWAG-manuscript
A small manuscript on the preparation and tomographic scanning of a corpus of cichlids from the EAWAG. And a bit on the treatment of the data.
GlobalDiagnostiX
Code and stuff written for my work on http://globaldiagnostix.org/
latex
Some LaTeX code snippets I've hacked together over the years.
latex-test
Results (automatically) in http://habi.github.io/latex-test/main.pdf
Lecture.Microtomography
A lecture on (micro)tomography
OpenSCAD
A collection of OpenSCAD models; stuff to fix private 'issues' and gifts
PhD-Thesis
My PhD-Thesis, copied from the virtual SVN-server I installed at the Institute of Anatomy of the University of Bern in Switzerland and migrated to git.
Zebra-Fish-Gills
Analysis for https://doi.org/10.1371/journal.pone.0228333
zmk-tooth-cohort
Scanning +100 teeth with our sample changer
habi's Repositories
habi/Lecture.Microtomography
A lecture on (micro)tomography
habi/editor-layer-index
A unified layer index for OSM editors.
habi/heart-neoangiogenesis
Analyzing tomographic scans of rat hearts
habi/name-suggestion-index
Canonical common brand names, operators, transit and flags for OpenStreetMap.
habi/pi2
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
habi/Talk.2020.AnatomyInternalSeminar
My talk for the internal seminar at the Institute of Anatomy
habi/wilkerstrasse.ch
Website für die Wilkerstrasse
habi/blog
My blog. Ran under http://habi.gna.ch with WordPress, is now "run" by `hugo` and hosted by Netlify under http://blog.davidhaberthuer.ch
habi/BrukerSkyScanLogfileRuminator
Boilerplate code to work with logfiles of tomograpic data acquired with Bruker SkyScan machines
habi/crowbook
Converts books written in Markdown to HTML, LaTeX/PDF and EPUB
habi/dotfiles
Tracking the settings of my most-used linux utilities.
habi/E461
E461 is Methyl cellulose and has a wide range of uses. Working on tomographic data of Methyl cellolose foams with a team of the Berner Fachhochschule, Hochschule der Künste Bern, Konservierung und Restaurierung
habi/FemalePelvicFloor
Files/Data to work on the female pelvic floor project
habi/hpc-unibe-ch.github.io
Guides, tutorials and documentation about the central HPC resources
habi/imagej.github.io
The ImageJ wiki
habi/Laminitis
habi/n5-ij
ImageJ convenience layer for N5
habi/osm-bingo-poc
habi/osm-community-index
:speech_balloon: An index of community resources for OpenStreetMap
habi/osmtags-editor
An extension that adds an "edit tags" button to every object on osm.org
habi/pinboard-angelesen
A simple aggregator for my weekly posts. Consumes a feed from pinboard.in and exports them as markdown
habi/porespy
A set of tools for characterizing and analying 3D images of porous materials
habi/rootstock
Clone me to create your Manubot manuscript
habi/sf
siliconfolklore main repo
habi/skan
Python module to analyse skeleton (thin object) images
habi/sticklebacks
Datwrangling tomographic scans of sticklebacks
habi/Talk.2024.AnatomyInternalSeminar
habi/tippecanoe
Build vector tilesets from large collections of GeoJSON features.
habi/wp-plugin-leaflet-map
Add leaflet maps to Wordpress with shortcodes
habi/wp2hugo
The best WordPress to static site migrator