/genetics-multiple-alignment

star alignment method implementation for multiple DNA sequences alignment

Primary LanguageJupyter Notebook

Python36

Genetics Multiple Alignment

[genetics-multiple-alignment] Genetics Multiple Alignment

Genetics Multiple Alignment is a package related to the multiple alignment of DNA sequences with the star alignment method. This was developed in the context of a bio-informatics course project at CentraleSupélec.

Authors:

  • Louis Bourguet
  • Hanaé Carrié

This package mainly provides:

  • utilitarian functions to insert gap into DNA sequences, to generate random mutations, calculate alignment score
  • a function to align 2 sequences together with the Needleman and Wunsch method
  • the multiple alignment function with the star method