handwerkerd
Staff Scientist focusing on fMRI methodology, particularly removing systemic noise from data. PhD Bioengineering
Silver Spring, MD, USA
handwerkerd's Stars
DorienHuijser/MRIsharingguide
We developed a guide for researchers in the Netherlands who want to share brain MRI data to help them get started.
gkaguirrelab/gkaModelEye
An anatomically accurate, ray-traced model eye in MATLAB.
BBillot/SynthSR
A framework for joint super-resolution and image synthesis, without requiring real training data
snastase/ohbm-traintrack-bids
TrainTrack materials on BIDS and BIDS Apps for OHBM Brainhack 2020
bids-apps/rsHRF
Resting state HRF estimation from BOLD-fMRI signal
carpentries-incubator/SDC-BIDS-IntroMRI
Introduction to MRI and BIDS
KirstieJane/bids-specification
Brain Imaging Data Structure (BIDS) Specification
physiopy/phys2bids
Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!
OHBA-analysis/HMM-MAR
Toolbox for segmentation and characterisation of transient connectivity
MHResearchNetwork/srpm-model
Suicide risk prediction modeling materials for 90-day suicide deaths and attempts
dalejn/cleanBib
Probabilistically assign gender and race proportions of first/last authors pairs in bibliography entries
SIMEXP/dynamic-states-parcellations
This repository includes the python script to generate dynamic states of parcellation of functional MRI data at the individual level.
Smithsonian/OpenAccess
Smithsonian Open Access Data Repository
NBCLab/power-replication
A replication and extension of Power et al. (2018)
biof309/spring_2020_thursdays
Course repository for FAES python class taught by John Lee
afni/afni
Official AFNI source and documentation
openai/retro
Retro Games in Gym
nimh-dsst/HPC_helpers
LewisNeuro/HRAN
We created a model to remove physiological noise in fast fMRI without external reference signals.
brainiak/brainiak
Brain Imaging Analysis Kit
neurolabusc/surf-ice
GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D, MZ3, NV (BrainNetViewer), OBJ, OFF, PLY, STL, VTK. Tractography formats include BFloat, PDB, TCK, TRK, and VTK. Also NIfTI format voxelwise images.
inm7/cbptools
CBPtools: A Python package for regional connectivity-based parcellation
jsheunis/rtme-fMRI-ISMRMb-2019
Code for generating results presented at poster P-043 at ISMRM Benelux 2019: Improving BOLD sensitivity with real-time multi-echo echo-planar imaging - towards a cleaner neurofeedback signal
bbfrederick/rapidtide
rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data
nih-fmrif/coders_forum
A repo to document the tutorials/rants/discussions/musings at the coder's forum
neurohackweek/python-for-scientists
Notebooks for NHW2017 tutorial "Programming in Python"
bids-standard/bids-starter-kit
The Starter-kit has moved to the new BIDS website.
xiuyechen/FishExplorer
interactive analysis of calcium imaging data from larval zebrafish
Remi-Gau/advanced_fMRI_course
List of ressources and practicals used for the fMRI data analysis course of UoB (UK) (2014-2017)
bids-standard/bids-specification
Brain Imaging Data Structure (BIDS) Specification