/bam_spot_check

A Python3 script to quickly spot check 10 random sequences from a BAM/FASTx file.

Primary LanguagePythonApache License 2.0Apache-2.0

A tool to spot check BAM files by sending 10 reads to the NCBI BLAST server.

Warnings: Try not to use this repeatedly in rapid succession. NCBI will ban you. This is the usual use at your own risk, I take no responsibility for anything.

Input: BAM file OR FASTA file OR nucleotide sequence

Requirements: Python 3.5 or above samtools