harper357
Bioinformatic Scientist at Nuanced Health Former: PostDoc in The Centre for Pathogen Evolution, U Cambridge, UK PhD at UCSF in the DeRisi Lab
Nuanced Health
Pinned Repositories
Racmacs
Racmacs R package for performing antigenic cartography
bam_spot_check
A Python3 script to quickly spot check 10 random sequences from a BAM/FASTx file.
cmdcoverage
Be able to take a BAM file and output a quick command line graph of coverage
MetagenomicAntibioticResistance
harper357's Repositories
harper357/bam_spot_check
A Python3 script to quickly spot check 10 random sequences from a BAM/FASTx file.
harper357/cmdcoverage
Be able to take a BAM file and output a quick command line graph of coverage
harper357/MetagenomicAntibioticResistance
harper357/arfs
All Relevant Feature Selection
harper357/ASG
Analyse Statistique des données Génomiques
harper357/best-practices
Source files for the Open, Transparent, and Reproducible Data Science Handbook
harper357/bioservices
Access to Biological Web Services from Python.
harper357/CircuitPython_BMP_Reader
Simple BMP image reader for MicroPython and CircuitPython
harper357/Collapsible_Headings
Implements Collapsible Headers for Jupyter Lab Notebooks
harper357/homebrew-science
:beer::microscope: Scientific formulae for the Homebrew package manager
harper357/jekyll_figure
A Liquid figure tag for Jekyll sites
harper357/linuxbrew
A fork of Homebrew for Linux
harper357/paper
A gentle theme for Jekyll utilising material design.
harper357/qmk_firmware
keyboard controller firmware for Atmel AVR USB family
harper357/quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
harper357/Racmacs
Racmacs R package for performing antigenic cartography (https://acorg.github.io/Racmacs)
harper357/scrum-guide
Diffable Scrum Guide in Markdown.
harper357/slack-export
A python slack exporter
harper357/slack-export-viewer
A Slack Export archive viewer that allows you to easily view and share your Slack team's export
harper357/slack2html
Export your Slack team's entire history as easily archivable and viewable HTML files
harper357/slackscrape
scrape messages from slack channels
harper357/starter-pack
Automatically build a Starter Pack release from nothing
harper357/stat1
Probabilités et statistiques pour la biologie - STAT1 - cours AMU SBBAU16L
harper357/TreasureBot
A bot for financial signal
harper357/UCSF-thesis-template
harper357/viral-ngs
Viral genomics analysis pipelines