harper357

harper357's Stars

• networkx/networkx

  Network Analysis in Python

  Language:Python14.8k2793.2k3.2k

• rfordatascience/tidytuesday

  Official repo for the #tidytuesday project

  Language:HTML6.8k5694562.4k

• TagStudioDev/TagStudio

  A User-Focused Photo & File Management System

  Language:Python5k73260366

• HugoBlox/theme-academic-cv

  🎓 无需编写任何代码即可轻松创建漂亮的学术网站 Easily create a beautiful academic résumé or educational website using Hugo and GitHub. No code.

  Language:TeX3.9k3406.3k

• dillonzq/LoveIt

  ❤️A clean, elegant but advanced blog theme for Hugo 一个简洁、优雅且高效的 Hugo 主题

  Language:JavaScript3.4k305031.1k

• Aloxaf/silicon

  Create beautiful image of your source code.

  Language:Rust3.1k157982

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.7k873.2k620

• HEIGE-PCloud/DoIt

  A clean, elegant and advanced blog theme for Hugo.

  Language:HTML7829421195

• Z1ni/XGP-save-extractor

  Python script to extract savefiles out of Xbox Game Pass for PC games

  Language:Python5651318036

• McShelby/hugo-theme-relearn

  A theme for Hugo designed for documentation

  Language:CSS3926769180

• Zaloog/kanban-python

  Kanban Terminal App written in Python

  Language:Python2544138

• apvarun/digital-garden-hugo-theme

  Build your own personal Digital Garden effortlessly with this Hugo theme

  Language:HTML24452477

• nf-core/mag

  Assembly and binning of metagenomes

  Language:Nextflow209153279107

• jupyter-book/jupyterlab-myst

  Use MyST Markdown directly in Jupyter Lab

  Language:TypeScript1401313317

• nf-core/taxprofiler

  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

  Language:Nextflow12714420035

• bigbio/proteomics-sample-metadata

  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

  7721270108

• StanfordDataScience/best-practices

  Source files for the Open, Transparent, and Reproducible Data Science Handbook

  483115

• pirovc/multitax

  Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

  Language:Python40463

• twbattaglia/MicrobeDS

  A repository for large-scale microbiome datasets, formatted for phyloseq

  Language:R31517

• scikit-learn-contrib/skdag

  A more flexible alternative to scikit-learn Pipelines

  Language:Python30688

• nextflow-io/nf-prov

  Language:Groovy2692311

• leylabmpi/SynTracker

  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same species) using genome synteny.

  Language:Python23315

• pirovc/grimer

  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.

  Language:Python20253

• rmcelreath/intro_to_stan_stancon2024

  Introductory tutorial on the Stan language

  Language:R20

• robinschmid/microbe_masst

  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes

  Language:Jupyter Notebook17437

• biobakery/MTX_model

  R package for differential expression analysis in metatranscriptomics

  Language:R91056

• nf-core/createtaxdb

  Parallelised and automated construction of metagenomic classifier databases of different tools

  Language:Nextflow7164283

• mcmero/labarchives-py

  A python wrapper for interacting with the LabArchives API.

  Language:Python50

• biodiversitydata-se/sbdi-gtdb

  Files for the SBDI Sativa curated GTDB 16S sequence files

  Language:Perl4311

• JoeRothwell/pcpr2

  The Principal Component Partial R-squared method (PC-PR2) package.

  Language:R4010