ncbi-blast
There are 38 repositories under ncbi-blast topic.
OpenHero/gblastn
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
enormandeau/ncbi_blast_tutorial
Crash course for NCBI blast tools
ginkgobioworks/edge
Efficiently keep track of changes to genomes
Joseph7e/Assign-Taxonomy-with-BLAST
Assign taxonomy with blast, can be used for qiime
guyleonard/taxdump_edit
:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
NAL-i5K/genomics-workspace
Django website project for common sequence search tools.
wyim-pgl/DCBLAST
Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
AshokHub/locBLAST
Local NCBI BLAST+ Search
AshokHub/BLASTphp
A PHP wrapper for NCBI BLAST URL API
NuruddinKhoiry/blastMining
Mining NCBI BLAST output
harper357/bam_spot_check
A Python3 script to quickly spot check 10 random sequences from a BAM/FASTx file.
pcantalupo/annotater
Annotate sequences by BLAST using NCBI taxonomy information
tripal/tripal_blast
Provides an user interface to BLAST on Tripal sites.
777moneymaker/jasper
Just a simple program for predicting virus hosts.
cparsania/phyloR
An R package to prepare data for phylogenetic analysis
yodeng/hpc-blast
divide blast query and run all chunks across HPC or localhost in parallelly
Akshit6828/Traverse-Indoor
This repository contains the Gene Reader App Codebase
lucaspalmeira/bioinfo
Guia de programas e ferramentas de bioinformática e química computacional
pranavkhurana/Seabuck-thorn
This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.
TheJacksonLaboratory/MA-GenTA
Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.
tripal/tripal_analysis_blast
This module extends the Tripal Analysis Module and provides a method for loading XML results from the NCBI blast program. Blast results appear on each feature page.
AhmedElsherbini/blastCblast_stats
Parse binary files from NCBI blast or Cblaster into more useful information (tree, table and pie chart)
cometsong/MA-GenTA
Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.
ebi-jdispatcher/jdispatcher-viewers
Interactive Visual Output and Functional Predictions visualisations for Job Dispatcher tool outputs
Nikhil190804/PB_Assignments
This is the repository for the Assignments of Practical Bioinformatics Course
patrick-douglas/Seqs-Extractor
The official Seqs-Extractor Repository
PrideInt/BLAST-query
Automating NCBI BLAST requests from FASTQ/FASTA/GENBANK files to format into a readable file, graph representation and more!
AjayD17/NCBI-Website
I developed the "National Centre for Biotechnology Information" project to create a comprehensive and user-friendly platform for accessing and exploring a wealth of biotechnological information. Utilizing HTML, CSS, and Bootstrap, I designed a responsive web application that ensures seamless accessibility across various devices and screen sizes.
AlbertoMartinPerez/Sequence_Analyzer_automations
Small project to use NCBI and RDP websites for Sequence alignments using Selenium for Python
AsbDaryaee/NCBI-Blast-Assistant
This tiny piece of program helps you transferring NCBI Blast result to spreadsheet. You just need to download the Blast result in a single JSON file.
asiort/OnlineMultiBLASTqueries
Does multiple nucleotidic | aminoacidic BLAST queries in the NCBI BLAST web from a given multiFASTA and writes the output with the results. The queries are parallelized using Threads.
phylogeny-lab/phylogeny-lab
A phylogenetics web app
ramadatta/CPgeneProfiler
CPgeneProfiler R package repository
ikizhvatov/docker-ncbi-blast-mgi
NCBI BLAST+ wrapper for WashU MGI cluster
JazzEd-EdTech/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
VEuPathDB/service-multi-blast
Async BLAST+ query service and supporting libraries.