MultiBlast

This repository is a "monorepo" containing various projects relating to and supporting the VEuPathDB MultiBlast service stack.

For development details and information see the Developer Info doc and/or the Design doc

An index of available API documentation can be found at https://veupathdb.github.io/service-multi-blast/

Projects / Components

BLAST+ Query Service: A containerized service whose purpose is the asynchronous execution of BLAST queries against mounted databases.
BLAST+ Result Formatting Service: A containerized services whose purpose is the asynchronous formatting of ASN.1 BLAST query results into various other formats via the BLAST+ blast_formatter tool.
MultiBlast Queue Database: Docker image containing setup scripts to provision the database schemata necessary to support the MultiBlast query and report services.

BLAST+ Query Parsing Tools: Multi-sequence BLAST query parsing tool kit.
BLAST+ CLI API Wrapper Type Library: NCBI BLAST+ tool CLI API wrapper.

Allows easy programmatic construction and validation of CLI calls to BLAST+ tools.
MultiBlast API SDK: JVM SDK for working with the MultiBlast API.
MultiBlast Common Utilities: Various utilities common to the other services and libraries in this repo.
Temp File Management Utilities: Expiring temporary file factory.
MultiBlast Gradle Plugin: A Gradle extension that adds utilities to support the MultiBlast project build tasks.

MultiBlast Docker Compose Stack: Docker Compose stack configuration for MultiBlast.
User Database DDL: DDL for the database schema and tables backing MultiBlast in the VEuPathDB user database.
v2.0 Migration Script: Script to migrate the backing user database from v0.x and v1.x data to v2.x.

End-to-End Tests: Test script that performs end-to-end testing on a running MultiBlast instance.