VEuPathDB/service-multi-blast

Issues

• offer to rerun jobs when broken because organism names changed and we did not map

  #219 opened a year ago by aurreco-uga
  1

• old mblast: error handling, bad ux

  #221 opened 9 months ago by aurreco-uga
  0

• Allow admin access on job details and job delete endpoints.

  #220 opened 10 months ago by Foxcapades
  0

• Turn off blast tool usage reporting to NCBI

  #218 opened a year ago by Foxcapades
  0

• Add an endpoint to both services to remove failed jobs for a campus.

  #217 opened a year ago by Foxcapades
  0

• Add an endpoint to both services to find all failed jobs for a campus.

  #216 opened a year ago by Foxcapades
  0

• Add/append endpoint to expire all jobs owned by a campus.

  #213 opened a year ago by aurreco-uga
  1

• v1.x.x - Add validation rule from CFastaReader for bad/good characters on the first line.

  #202 opened a year ago by Foxcapades
  0

• v1.x.x - Bug in query validation overreading first line causing index out of bounds.

  #214 opened a year ago by Foxcapades
  0

• Investigate formatter error outputs

  #212 opened 2 years ago by Foxcapades
  0

• issues with understanding errors (might require client work)

  #208 opened 2 years ago by aurreco-uga
  5

• v2.x.x - Add validation rule from CFastaReader for bad/good characters on the first line.

  #200 opened 2 years ago by Foxcapades
  0

• Verify new job creation with subjobs.

  #203 opened 2 years ago by Foxcapades
  1

• Log blast output

  #199 opened 2 years ago by Foxcapades
  0

• Log blast output in mblast-old.

  #201 opened 2 years ago by Foxcapades
  0

• Query Service: job creation date in job list

  #196 opened 2 years ago by Foxcapades
  0

• Seg yes/no.

  #193 opened 2 years ago by Foxcapades
  0

• Report Service: job creation date in job list

  #195 opened 2 years ago by Foxcapades
  0

• Dust yes/no.

  #191 opened 2 years ago by Foxcapades
  0

• Delete job endpoint for report service.

  #175 opened 2 years ago by Foxcapades
  0

• Report Service: Link guest jobs to logged in user endpoint.

  #178 opened 2 years ago by Foxcapades
  0

• Query Service: Endpoint to expire a job

  #187 opened 2 years ago by Foxcapades
  0

• Report Service: Make the build number part of the base path for the minio client

  #186 opened 2 years ago by Foxcapades
  0

• Query Service: Make the build number part of the base path for the minio client

  #185 opened 2 years ago by Foxcapades
  0

• Report Service: Endpoint to expire a job

  #188 opened 2 years ago by Foxcapades
  0

• Query Service: Link guest jobs to logged in user endpoint.

  #174 opened 2 years ago by Foxcapades
  1

• Query to sub-query links.

  #181 opened 2 years ago by Foxcapades
  0

• Add blast metrics to the query service.

  #183 opened 2 years ago by Foxcapades
  0

• Why is the subquery position column constant in the SQL package unused?

  #180 opened 2 years ago by Foxcapades
  1

• Ignore numbers when generating a hash of the blast query.

  #157 opened 2 years ago by Foxcapades
  1

• Query service should have a stderr output endpoint like the report service.

  #176 opened 2 years ago by Foxcapades
  0

• Return formatter errors to the client when a config fails validation.

  #127 opened 2 years ago by Foxcapades
  5

• Query service: insertChildJobLinks is dead code.

  #169 opened 2 years ago by Foxcapades
  0

• addToUserCollection should default to true in query service.

  #171 opened 2 years ago by Foxcapades
  0

• rename "meta" field in the query service API to "userMeta" to align with the report service API

  #168 opened 2 years ago by Foxcapades
  0

• Record actual blast command.

  #143 opened 2 years ago by Foxcapades
  1

• jobs endpoint not reading the workspace status flag

  #158 opened 2 years ago by aurreco-uga
  1

• user database job cleanup

  #146 opened 2 years ago by aurreco-uga
  1

• 2 database related 500 database errors: make 400 and ignore, respectively

  #147 opened 2 years ago by aurreco-uga
  2

• Log command used for formatter.

  #144 opened 2 years ago by Foxcapades
  0

• mblast: when logging in, the existing guest jobs description field does not get copied

  #148 opened 2 years ago by aurreco-uga
  1

• 500 - Unrecognized JobStatus value: running

  #145 opened 2 years ago by aurreco-uga
  0

• blast_formatter not logging job IDs

  #130 opened 2 years ago by Foxcapades
  0

• blast_formatter metrics

  #133 opened 2 years ago by Foxcapades
  0

• blast formatter, validator, queue: log should be in EST

  #128 opened 2 years ago by aurreco-uga
  0

• Blast container omitting penalty flag in command execution.

  #126 opened 2 years ago by Foxcapades
  0

• Re-examine which endpoints actually require auth.

  #124 opened 2 years ago by Foxcapades
  0

• Add JVM flag for heap-dump on OOM

  #125 opened 2 years ago by Foxcapades
  0

• Log4j config broken resulting in no logging.

  #123 opened 2 years ago by Foxcapades
  1

• Formatter workspace should be created by the blast service, not the formatter server.

  #132 opened 2 years ago by Foxcapades
  1