holtgrewe

holtgrewe's Stars

• oven-sh/bun

  Incredibly fast JavaScript runtime, bundler, test runner, and package manager – all in one

  Language:Zig74.3k5979.3k2.8k

• meilisearch/meilisearch

  A lightning-fast search API that fits effortlessly into your apps, websites, and workflow

  Language:Rust47.4k2872k1.8k

• vlang/v

  Simple, fast, safe, compiled language for developing maintainable software. Compiles itself in <1s with zero library dependencies. Supports automatic C => V translation. https://vlang.io

  Language:V35.8k4778.7k2.2k

• biomejs/biome

  A toolchain for web projects, aimed to provide functionalities to maintain them. Biome offers formatter and linter, usable via CLI and LSP.

  Language:Rust15.4k511.4k480

• twpayne/chezmoi

  Manage your dotfiles across multiple diverse machines, securely.

  Language:Go13.4k531.4k493

• neuml/txtai

  💡 All-in-one open-source embeddings database for semantic search, LLM orchestration and language model workflows

  Language:Python9.4k92770600

• prefix-dev/pixi

  Package management made easy

  Language:Rust3.3k221k188

• ashvardanian/StringZilla

  Up to 10x faster strings for C, C++, Python, Rust, and Swift, leveraging NEON, AVX2, AVX-512, and SWAR to accelerate search, sort, edit distances, alignment scores, etc 🦖

  Language:C++2.2k268276

• dtolnay/miniserde

  Data structure serialization library with several opposite design goals from Serde

  Language:Rust80972128

• pysam-developers/pysam

  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

  Language:Cython78547926273

• mxmlnkn/rapidgzip

  Gzip Decompression and Random Access for Modern Multi-Core Machines

  Language:C++3727447

• neithere/argh

  An argparse wrapper that doesn't make you say "argh" each time you deal with it.

  Language:Python3691014856

• Byron/prodash

  report progress of concurrent applications and display it in various ways

  Language:Rust3535129

• leipzig/awesome-reproducible-research

  A curated list of reproducible research case studies, projects, tutorials, and media

  Language:Python3231810038

• rrwick/Filtlong

  quality filtering tool for long reads

  Language:C++291143928

• fsspec/universal_pathlib

  pathlib api extended to use fsspec backends

  Language:Python2491112944

• bcgsc/NanoSim

  Nanopore sequence read simulator

  Language:Python2421817757

• imgag/ngs-bits

  Short-read sequencing tools

  Language:C++1501628932

• IndexXuan/vite-plugin-html-template

  html template for vite, like html-webpack-plugin for webpack.

  Language:TypeScript12132522

• volo-rs/faststr

  `faststr` is a string library that try to avoid the cost of clone.

  Language:Rust93437

• ncbi/clinvar

  ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov' with any questions or comments.

  Language:HTML7018814

• Colonial-Dev/inkjet

  A batteries-included syntax highlighting library for Rust, based on tree-sitter.

  Language:C644185

• fritzsedlazeck/Spectre

  Copy number caller for long read data including SNV utilization

  Language:Python539333

• ga4gh/vrs-python

  GA4GH Variation Representation Python Implementation

  Language:Python511922027

• oicr-gsi/djerba

  Create cancer bioinformatics reports from metadata and workflow output

  Language:Python9454

• swe4s/lectures

  Language:Jupyter Notebook56

• fasrc/fas-ondemand-rstudio

  interactive application to run Rstudio on Ondemand

  Language:HTML4

• Liorgal28/rust-speedb

  A wrapper for speedb

  Language:Rust3

• arturolp/LollipopVariant

  Creating lollipop plots for ClinVar variants by gene

  Language:R10

• varfish-org/clinvar-data-jsonl

  Weekly ClinVar releases as JSONL with additonal useful files

  Language:HCL1