hubmapconsortium/ingest-validation-tools

Issues

• CosMx Release v2.0.0

  #1380 opened a month ago by johardi
  0

• Xenium v2.0.0 release

  #1374 opened 2 months ago by johardi
  0

• Segmentation mask v1.0.0 release

  #1348 opened 5 months ago by johardi
  1

• [New Release] Source-murine

  #1325 opened 8 months ago by johardi
  0

• Add "Stored as 4 degrees Celsius" option to Sample Block preparation_condition

  #1300 opened 10 months ago by HerrLufty
  3

• New preparation_instrument_model for H&E Histology

  #1301 opened 10 months ago by HerrLufty
  4

• [Metadata Release] Release Cell DIVE v2.2.0

  #1291 opened a year ago by johardi
  0

• [Metadata Release] New release per 01/09/2024

  #1282 opened a year ago by johardi
  0

• [Metadata Release] New release per 01/08/2024

  #1280 opened a year ago by johardi
  0

• [Metadata Release] New release per 12/12/2023

  #1275 opened a year ago by johardi
  0

• [Metadata Release] New release per 11/22/2023

  #1262 opened a year ago by johardi
  0

• Change ... directory schema: ...

  #1253 opened a year ago by bhonick
  1

• [Metadata Release] New release per 11/07/2023

  #1243 opened a year ago by johardi
  0

• [Metadata Release] New release per 11/09/2023

  #1246 opened a year ago by johardi
  1

• Remove NanoSplits

  #1242 opened a year ago by johardi
  0

• [Metadata Release] New release per 10/23/2023

  #1235 opened a year ago by johardi
  0

• [Metadata Release] New release per 10/18/2023

  #1229 opened a year ago by johardi
  0

• [Metadata Release] New release per 10/17/2023

  #1227 opened a year ago by johardi
  0

• [Metadata Release] New release per 10/10/2023

  #1224 opened a year ago by johardi
  0

• [Metadata Release] New release per 10/09/2023

  #1219 opened a year ago by johardi
  0

• [Metadata Release] New release per 09/23/2023

  #1213 opened a year ago by johardi
  1

• [Metadata Release] New release per 10/03/2023

  #1215 opened a year ago by johardi
  0

• [Metadata Release] New release per 08/03/2023

  #1198 opened a year ago by johardi
  4

• [bulkRNAseq] Change `assay_type` from `bulk RNA` to `bulk-RNA`

  #1188 opened 2 years ago by bhonick
  0

• Update sample-section, sample-block, sample-section to revise naming of "preparation condition" and "storage condition"

  #1180 opened 2 years ago by bhonick
  0

• DEPRECATED SEE ASANA -- bulkATACseq Validation Broken

  #1153 opened 2 years ago by bhonick
  1

• Upgrade the frictionless package

  #1172 opened 2 years ago by yuanzhou
  0

• Updated ErrorReport class breaks external calls to it

  #1145 opened 2 years ago by sunset666
  0

• Add design_description to sequencing assay metdata schemas to meet dbgap requirements

  #1167 opened 2 years ago by bhonick
  0

• Change assay_type to accomodate MIBI in addition to Multiplexed Ion Beam Imaging | metadata schema: MIBI

  #1165 opened 2 years ago by bhonick
  0

• Change Imaging mass spectrometry metadata schema: some field types and required fields should be changed

  #1160 opened 2 years ago by NHPatterson
  0

• Exclude HCA from main ToC

  #1117 opened 2 years ago by mccalluc
  0

• Add examples to geomx directory structure schema

  #1157 opened 2 years ago by icaoberg
  0

• Change stained microscopy directory schema to be more generic and not specific to PAS microscopy, use OME-TIFF as raw data format

  #1138 opened 2 years ago by NHPatterson
  2

• Change codex-v1 metadata schema to eliminate CODEX2 type string

  #1151 opened 2 years ago by jswelling
  0

• Create a codex-v1 directory schema which supports directories with and without dataset.json

  #1152 opened 2 years ago by jswelling
  0

• Update Sample v0 description for sample_id

  #1149 opened 2 years ago by bhonick
  0

• Validate_upload should require contributors and antibodies to be actual files

  #1143 opened 2 years ago by jswelling
  0

• validate_upload should not allow two lines to share the same data_path

  #1142 opened 2 years ago by jswelling
  0

• Change directory schema validation so that zero-length files don't satisfy schema requirements

  #1140 opened 2 years ago by jswelling
  0

• Issues when running tests

  #1133 opened 2 years ago by icaoberg
  1

• Change LCMS metadata schema: allow a comma separate list of values for tissue id field

  #1132 opened 2 years ago by pdblood
  0

• FileNotFoundError in windows command line

  #1129 opened 2 years ago by mzhou2012
  3

• contributors.tsv for HCA should be required

  #1113 opened 2 years ago by mccalluc
  7

• parallelize test runs

  #1123 opened 2 years ago by mccalluc
  0

• metadata with 'NA' in contributors path passes local validation

  #1112 opened 2 years ago by jswelling
  3

• Include Assay service name in generated docs

  #1118 opened 2 years ago by mccalluc
  0

• Explain why there are so many RNA seq assay names

  #1119 opened 2 years ago by mccalluc
  0

• Update README when PSC documentation is available

  #1116 opened 2 years ago by mccalluc
  0

• contributors.tsv: Require at least one `is_contact`?

  #1111 opened 2 years ago by mccalluc
  4