humanlongevity/HLA

Issues

• Use of IPD-IMGT/HLA Reference Files

  #68 opened 4 months ago by jrob119
  0

• some questions about genome version

  #64 opened 2 years ago by milkcookie
  2

• Option --full doesn't work correctly

  #56 opened 5 years ago by PKazakova
  3

• run errors

  #25 opened 7 years ago by cjieming
  5

• Read length for xHLA

  #66 opened a year ago by serge2016
  1

• xHLA invalid input file, /get-reads-alt-unmap.sh not working.

  #37 opened 6 years ago by gunyorka
  4

• HLA? Why I need to learn this?

  #63 opened 2 years ago by mikk1max
  0

• error in more$solution $ operator is invalid for atomic vectors

  #55 opened 5 years ago by alexvpickering
  1

• Fail to run with test.bam file

  #32 opened 7 years ago by icymiktreize
  7

• how to tun it in singularity environment?

  #44 opened 5 years ago by xhy1219
  1

• Typing of DQA1 and DPA1

  #48 opened 5 years ago by memumab
  1

• test run failed to read file from test folder

  #61 opened 3 years ago by hafizmtalha
  0

• Error in fread(align.path) : File is empty: hla-SU-DIPG_24/SU-DIPG_24.tsv Execution halted

  #62 opened 3 years ago by hafizmtalha
  0

• HLA Typing with 10X scRNAseq data (5' chemistry)

  #50 opened 3 years ago by Close-your-eyes
  0

• Can I run xHLA without docker?

  #45 opened 6 years ago by Tiredbird
  8

• ? discussion of output values ?

  #60 opened 3 years ago by DanWinder
  0

• Non human-readable error for test data SRR6000626

  #59 opened 4 years ago by serge2016
  0

• An irreproducibility of some results

  #54 opened 5 years ago by PKazakova
  1

• Interpreting the result for matched T-N samples

  #58 opened 4 years ago by aditisk
  0

• Why xHLA does not work for test.bam

  #49 opened 5 years ago by dulunar
  1

• Error: Error detecting input file format. First line seems to be blank.

  #57 opened 4 years ago by AlisaFbb
  0

• Python 3 support

  #52 opened 5 years ago by PKazakova
  2

• get-reads-alt-unmap.sh get "[bwt_restore_sa] SA-BWT inconsistency: primary is not the same. Abort!"

  #40 opened 6 years ago by yubau1112
  4

• [E::bwa_idx_load_from_disk] fail to locate the index files when running

  #51 opened 5 years ago by NTNguyen13
  4

• full resolution result strange

  #53 opened 5 years ago by xhy1219
  0

• Which GrCh38 reference file to use ?

  #29 opened 7 years ago by Krithika-Bhuvan
  1

• problem when run get-reads-alt-unmap.sh

  #47 opened 6 years ago by Huangpq2019
  0

• xHLA:for non-human samples

  #46 opened 6 years ago by Dharmendra-G-1
  0

• the meaning in the full resolution result

  #43 opened 6 years ago by xhy1219
  0

• Script typing.r breaks

  #38 opened 6 years ago by abhisheknrl
  5

• how to use get-reads-alt-unmap via docker?

  #41 opened 6 years ago by xhy1219
  2

• cant perform non-core exons typing

  #42 opened 6 years ago by xhy1219
  0

• title

  #39 opened 6 years ago by yubau1112
  0

• run get-reads-alt-unmap.sh in container

  #35 opened 6 years ago by tmhmxg59
  3

• Issue with accuracy

  #16 opened 7 years ago by hlu1992
  2

• Cut ties to specific build?

  #20 opened 7 years ago by keiranmraine
  3

• Error message

  #22 opened 7 years ago by compbio
  1

• Fail to type several HLA types

  #34 opened 7 years ago by BriannaGao
  0

• change from detectCores() to future::availableCores() in testing.r?

  #33 opened 7 years ago by wresch
  0

• Can xHLA be used for HLA-typing using RNA-Seq data

  #30 opened 7 years ago by raunaq-m
  2

• Ability to specify max cpus

  #31 opened 7 years ago by keiranmraine
  0

• missing chr6.fna

  #28 opened 7 years ago by cjieming
  1

• issues with missing calls and accuracy

  #27 opened 7 years ago by cjieming
  4

• Error in dcast.data.table

  #26 opened 7 years ago by AngelinaSverchkova
  0

• novel alleles/confidence score/coverage

  #24 opened 7 years ago by afadda91
  0

• samtools view: failed to open

  #23 opened 7 years ago by bwubb
  1

• README for output

  #21 opened 7 years ago by cjieming
  0

• I dont have any sudo permission on my institution's server, can I still install xHLA?

  #18 opened 7 years ago by cjieming
  2

• Register tool in Dockstore?

  #19 opened 7 years ago by keiranmraine
  0

• is this a bug or something wrong with my test data?

  #17 opened 7 years ago by zd200572
  1