Pinned Repositories
bayesian-data-analysis-in-r
A workshop introducing some of the Bayesian data analysis tools available in R.
BUG-talk-2015-11-18
Seminar talk given at the Bioinformatics User Group at the Garvan on 18/11/2015.
ChIPsim
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ChIPsim.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ChIPsim.
miPredict
octopress-docker
A Docker image to run an Octopress blog
reportmd
Create multi-page HTML reports in R
reproducible-reports
Tutorial on how to write reproducible scientific reports in Markdown, using knitr and pandoc.
humburg's Repositories
humburg/reproducible-reports
Tutorial on how to write reproducible scientific reports in Markdown, using knitr and pandoc.
humburg/octopress-docker
A Docker image to run an Octopress blog
humburg/ChIPsim
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ChIPsim.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ChIPsim.
humburg/pirates
Improving the quality of deep sequencing data
humburg/HealthHack2016
humburg/knitr
A general-purpose tool for dynamic report generation in R
humburg/knitrBootstrap
A framework to create bootstrap styled HTML reports from knitr Rmarkdown.
humburg/MACS
MACS -- Model-based Analysis of ChIP-Seq
humburg/optparse
R package providing a commandline optional argument parser
humburg/pandoc-templates
Templates for pandoc
humburg/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
humburg/readr
Read flat files (csv, tsv, fwf) into R
humburg/Rsge
SGE interface for the R programming language
humburg/toil
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python