Pinned Repositories
scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
awesome-mac
Now we have become very big, Different from the original idea. Collect premium software in various categories.
awesome-r-learning-resources
A curated collection of free resources to help deepen your understanding of the R programming language. Updated regularly. Contributions encouraged via pull request (see contributing.md).
Basset
Convolutional neural network analysis for predicting DNA sequence activity.
brook
A cross-platform programmable network tool. 一个跨平台可编程网络工具.
CAUSALdb-finemapping-pip
A GWAS fine-mapping pipeline used in CAUSALdb
CellWalkR
CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
CRADLE
create_cisTarget_databases
Create cisTarget databases
hzauleibowen's Repositories
hzauleibowen/rna-seq
Transcription analysis
hzauleibowen/awesome-mac
Now we have become very big, Different from the original idea. Collect premium software in various categories.
hzauleibowen/brook
A cross-platform programmable network tool. 一个跨平台可编程网络工具.
hzauleibowen/scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
hzauleibowen/selene
a framework for training sequence-level deep learning networks
hzauleibowen/TOSICA
Transformer for One-Stop Interpretable Cell-type Annotation
hzauleibowen/rMVP
:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
hzauleibowen/PigGTEx-Pipeline-v0
hzauleibowen/cutTag-pipeline
Pipeline for Cut&Tag analysis
hzauleibowen/scrnapip
A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
hzauleibowen/CRADLE
hzauleibowen/WGS
hzauleibowen/ggh4x
ggplot extension: options for tailored facets, multiple colourscales and miscellaneous
hzauleibowen/HiC_tools
A collection of tools for Hi-C data analysis
hzauleibowen/ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
hzauleibowen/PyWGCNA
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
hzauleibowen/dictys
Context specific and dynamic gene regulatory network reconstruction and analysis
hzauleibowen/reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
hzauleibowen/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
hzauleibowen/tfboot
R package for bootstrapping motifbreakR results
hzauleibowen/susieR
R package for "sum of single effects" regression.
hzauleibowen/VariabilityInTEs
hzauleibowen/kkndme_tianya
天涯 kkndme 神贴聊房价
hzauleibowen/sc-type
hzauleibowen/higlass-server
Server component for HiGlass that manages and serves tiled data
hzauleibowen/scScalpChromatin
很全面的单细胞图谱代码
hzauleibowen/TEProf2Paper
TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
hzauleibowen/polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
hzauleibowen/create_cisTarget_databases
Create cisTarget databases
hzauleibowen/HiCSampler