hzauleibowen

hzauleibowen's Stars

• apachecn/ailearning

  AiLearning：数据分析+机器学习实战+线性代数+PyTorch+NLTK+TF2

  Language:Python39k1.7k11211.4k

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++70129821270

• omnideconv/immunedeconv

  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

  Language:R4351390101

• MedChaabane/DEFT

  Joint detection and tracking model named DEFT, or ``Detection Embeddings for Tracking." Our approach relies on an appearance-based object matching network jointly-learned with an underlying object detection network. An LSTM is also added to capture motion constraints.

  Language:Python265123143

• broadinstitute/ABC-Enhancer-Gene-Prediction

  Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

  Language:Python197149458

• Benson-Genomics-Lab/TRF

  Tandem Repeats Finder: a program to analyze DNA sequences

  Language:C14772326

• hakyimlab/MetaXcan

  MetaXcan software and manuscript

  Language:Python1381611591

• JackieHanLab/TOSICA

  Transformer for One-Stop Interpretable Cell-type Annotation

  Language:Jupyter Notebook12421924

• cellgeni/scRNA.seq.course

  Analysis of single cell RNA-seq data course

  Language:TeX1092052

• FredHutch/SEACR

  SEACR: Sparse Enrichment Analysis for CUT&RUN

  Language:Shell9698742

• carmonalab/scGate

  marker-based purification of cell types from single-cell RNA-seq datasets

  Language:R8752712

• gymreklab/GangSTR

  A tool for profiling long STRs from short reads

  Language:C++8176316

• rnakato/ShortCake

  A docker image for single-cell analysis

  Language:R625713

• BioContainers/specs

  BioContainers specifications

  49238312

• genomicsITER/NanoDJ

  NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly

  Language:Jupyter Notebook495319

• aet21/SCENT

  Estimation of Single-Cell Potency with Single Cell Entropy

  Language:R37369

• zzz2010/5UTR_Optimizer

  Code for 5UTR project

  Language:R22325

• xuzhougeng/org.Osativa.eg.db

  Language:R19327

• AGIScuipeng/PMPrimer

  Automatically design multiplex PCR primer pairs for diverse templates

  Language:Python17087

• aertslab/scATAC-seq_benchmark

  Language:Jupyter Notebook11412

• PulverCyril/craTEs

  Estimate the cis-regulatory activity of transposable element (TEs) subfamilies

  Language:R9

• liangliangibp/Alu

  Language:Perl8

• Bio-protocol/GO_KEGG_enrichment_analysis_for_rice_genes

  Language:R75

• cggh/biipy

  Docker image for bioinformatics analysis.

  Language:Jupyter Notebook66222

• maudf/gtex_condor

  Language:R6100

• Velcon-Zheng/rm-rt

  A tool to avoid deleting files or directories with commands rm by mistake，and set a self-cleaning recycling station in linux system or others.

  Language:Shell50

• cumc/handson-tutorials

  Computer lab tutorials on statistical genetics and omics data science, contributed by various members from the community interested in developing training material for the next generation scientists

  Language:Jupyter Notebook410

• ucfcbb/RNAMotifContrast

  Language:Python3

• hzauleibowen/scenicplus

  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

  Language:Jupyter Notebook1000

• jxlabWzZ/Susrepeats

  A repository of Sus scrofa short tandem repeats (STRs) project

  Language:Python10