carmonalab/scGate

Issues

• Use of Custom Markers for scGate

  #32 opened 3 months ago by cwarden45
  2

• incomplete final line found by readTableHeader on HSPC_scGate_Model

  #31 opened 7 months ago by bbimber
  2

• scGate as a multi-class classifier

  #24 opened a year ago by jiangzh-coder
  1

• kNN smoothing parameters

  #23 opened a year ago by JGarnica22
  1

• Prepare for upcoming Seurat v5 release

  #25 opened a year ago by saketkc
  0

• scGate parallelization

  #27 opened a year ago by halterc
  0

• Add in custom scGATE db function

  #20 opened a year ago by KerryAM-R
  0

• Possible issue related to future / parallelism?

  #18 opened a year ago by bbimber
  1

• nn.idx with pre-calculated dimensionality reductions

  #17 opened a year ago by dy-lin
  5

• Re-use existing ucell score columns in a seurat object?

  #8 opened a year ago by bbimber
  1

• More automatic translation of is.pure.levelX -> label?

  #2 opened a year ago by bbimber
  6

• Discrepancy in genes included in block list between Human and Mouse

  #26 opened a year ago by JGarnica22
  0

• Update models for blood cells

  #21 opened a year ago by halterc
  1

• Create model for macrophages

  #22 opened a year ago by halterc
  1

• scGate & performance.metrics

  #16 opened 2 years ago by denizff
  3

• combining model_DBs

  #19 opened 2 years ago by gianfilippo
  6

• Use of pos.thr neg.thr

  #15 opened 2 years ago by france-hub
  2

• plot_UCell_scores() fails unless scGate() is run with save.levels=T

  #14 opened 2 years ago by sjcarmona
  0

• for merged datasets, allow for independent gating

  #12 opened 2 years ago by sjcarmona
  1

• Ucell scores for _additional_signatures_ not exported in multi-model mode [dev]

  #13 opened 2 years ago by sjcarmona
  0

• new function to evaluate multiple models (list) with one command

  #10 opened 2 years ago by sjcarmona
  1

• new function to obtain a multi-class variable from a set of scGate models' pure/impure output

  #11 opened 2 years ago by sjcarmona
  3

• Can I run multiple scGate models and aggregate the results for cell types of interest?

  #7 opened 3 years ago by antonioggsousa
  2

• Logical operators

  #4 opened 3 years ago by france-hub
  8

• ArchRproject implementation

  #6 opened 3 years ago by NoemieL
  3

• Error: irlba(A = t(x = object), nv = npcs, ...)

  #5 opened 3 years ago by bbimber
  4

• scGate() fails

  #3 opened 3 years ago by kthorner
  4