Pinned Repositories
ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
awesome-mac
Now we have become very big, Different from the original idea. Collect premium software in various categories.
awesome-r-learning-resources
A curated collection of free resources to help deepen your understanding of the R programming language. Updated regularly. Contributions encouraged via pull request (see contributing.md).
Basset
Convolutional neural network analysis for predicting DNA sequence activity.
brook
A cross-platform programmable network tool. 一个跨平台可编程网络工具.
CAUSALdb-finemapping-pip
A GWAS fine-mapping pipeline used in CAUSALdb
CellWalkR
CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
CRADLE
create_cisTarget_databases
Create cisTarget databases
scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
hzauleibowen's Repositories
hzauleibowen/awesome-r-learning-resources
A curated collection of free resources to help deepen your understanding of the R programming language. Updated regularly. Contributions encouraged via pull request (see contributing.md).
hzauleibowen/Basset
Convolutional neural network analysis for predicting DNA sequence activity.
hzauleibowen/CAUSALdb-finemapping-pip
A GWAS fine-mapping pipeline used in CAUSALdb
hzauleibowen/CellWalkR
CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
hzauleibowen/DeepLearning
hzauleibowen/DeepLearning-
深度学习入门教程, 优秀文章, Deep Learning Tutorial
hzauleibowen/DNA-Sequence-Machine-learning
Understand DNA structure and how machine learning can be used to work with DNA sequence data.
hzauleibowen/EagleC
A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps
hzauleibowen/HiCcompareWorkshop
Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76
hzauleibowen/HTvertebrates
scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species
hzauleibowen/Imputation_beagle_tutorial
Imputation-beagle-tutorial
hzauleibowen/IReNA
R package IReNA
hzauleibowen/marge-snp-for-TF-
hzauleibowen/MatrixEQTL
Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
hzauleibowen/MethylMix
Identification of differentially methylated genes in biomedical data
hzauleibowen/motif-clustering
Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
hzauleibowen/Phylostratigraphy
Tutorial on how to perform phylostratigraphy
hzauleibowen/Python-math
All Algorithms implemented in Python
hzauleibowen/STREAM
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
hzauleibowen/TE_landscape
hzauleibowen/TOBIAS
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
hzauleibowen/TWAS-pipeline
TWAS-pipeline