Pinned Repositories
10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
addinslist
📜 Discover and install useful RStudio addins
advanced_programming
advanced programming
alacritty
A cross-platform, GPU-accelerated terminal emulator
analysis-workflows
Open workflow definitions for genomic analysis from MGI at WUSM.
awesome-python
A curated list of awesome Python frameworks, libraries and software.
stereoscope
Spatial mapping of cell types by integration of transcriptomics data
too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
URD
URD - Reconstruction of Branching Developmental Trajectories
hzongyao's Repositories
hzongyao/ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
hzongyao/advanced_programming
advanced programming
hzongyao/stereoscope
Spatial mapping of cell types by integration of transcriptomics data
hzongyao/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
hzongyao/bget
Portable command-line tool to query bioinformatics APIs, data, databases and files.
hzongyao/bisque
An R toolkit for estimation of cell composition from bulk expression data
hzongyao/cellxgene
An interactive explorer for single-cell transcriptomics data
hzongyao/deepcell-tf
Deep Learning Library for Single Cell Analysis
hzongyao/DoubletDetection
Doublet detection in single-cell RNA-seq data.
hzongyao/dyno
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
hzongyao/GitNote_image
hzongyao/JianlinLiuSingleCell
hzongyao/leoatchina-datasci
基于rstudio、code-server、jupyter-lab的dockerfile,用于快速搭建数据分析环境。
hzongyao/loompy
Python implementation of the Loom file format - http://loompy.org
hzongyao/pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
hzongyao/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
hzongyao/Python
最良心的 Python 教程:
hzongyao/python_for_linux_system_administration
hzongyao/REDItools
REDItools are python scripts to investigate RNA editing at genomic scale.
hzongyao/REDItools2
hzongyao/scCancer
A package for automated processing of single cell RNA-seq data in cancer
hzongyao/SCDC
SCDC
hzongyao/scTyper
scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
hzongyao/self-assembling-manifold
The Self-Assembling-Manifold (SAM) algorithm.
hzongyao/SEQprocess
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
hzongyao/shiny-upsetr
An interactive Shiny App for UpSet plots.
hzongyao/snpeffToMaf
Converts snpeff annotations into MAF
hzongyao/systemPipeR
Project Website:
hzongyao/systemPipeRdata
NGS workflow templates and sample data
hzongyao/UPhyloplot2
Draw phylogenetic trees of tumor evolution