Pinned Repositories
10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
addinslist
📜 Discover and install useful RStudio addins
advanced_programming
advanced programming
alacritty
A cross-platform, GPU-accelerated terminal emulator
analysis-workflows
Open workflow definitions for genomic analysis from MGI at WUSM.
awesome-python
A curated list of awesome Python frameworks, libraries and software.
stereoscope
Spatial mapping of cell types by integration of transcriptomics data
too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
URD
URD - Reconstruction of Branching Developmental Trajectories
hzongyao's Repositories
hzongyao/ggplotify
ggplot everything
hzongyao/PicGo
:rocket:A simple & beautiful tool for pictures uploading built by vue-cli-electron-builder
hzongyao/CONICS
CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
hzongyao/ImmuneSubtypeClassifier
An R package for classification of immune subtypes, in cancer, using gene expression data.
hzongyao/one-python-craftsman
来自一位 Pythonista 的编程经验分享,内容涵盖编码技巧、最佳实践与思维模式等方面。
hzongyao/forcats
🐈🐈🐈🐈: tools for working with categorical variables (factors)
hzongyao/vnote
A note-taking application that knows programmers and Markdown better.
hzongyao/bam-readcount
count DNA sequence reads in BAM files
hzongyao/10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
hzongyao/MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
hzongyao/radian
A 21 century R console
hzongyao/merip_reanalysis_scripts
Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
hzongyao/broom
Convert statistical analysis objects from R into tidy format
hzongyao/CCInx
Build predicted cell-cell interaction networks from single-cell data.
hzongyao/createKEGGdb
Create KEGG.db Package
hzongyao/singleseqgset
Gene set enrichment analysis for single-cell RNAseq data
hzongyao/nichenetr
NicheNet: predict active ligand-target links between interacting cells
hzongyao/MuSiC
Multi-subject Single Cell Deconvolution
hzongyao/rigraph
igraph R package
hzongyao/URD
URD - Reconstruction of Branching Developmental Trajectories
hzongyao/scRNA_10X
hzongyao/scRNA_smart_seq2
hzongyao/Immune-Subtype-Clustering
This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
hzongyao/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
hzongyao/hydra_single_cell
hzongyao/snakecase
🐍🐍🐍 A systematic approach to parse strings and automate the conversion to snake_case, UpperCamelCase or any other case.
hzongyao/SCmut
hzongyao/scWGCNA
Weighted gene co-expression network analysis for scRNA-seq data in Seurat
hzongyao/too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
hzongyao/RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data