igrabski/sc-SHC

Issues

• Error: TridiagEigen: eigen decomposition failed

  #26 opened 2 months ago by kloot
  4

• `scSHC` error: `Error in fitdistr(Qclusts2, "normal") : 'x' must be a non-empty numeric vector`

  #25 opened 3 months ago by mschilli87
  24

• testClusters function ends abruptly and gives a single cluster assignment to all cells

  #24 opened 5 months ago by amruta2612
  7

• Error running scSHC even with matrix dimension >3

  #23 opened 6 months ago by sg3451
  7

• Cannot extract p-values from cluster comparisons

  #22 opened 6 months ago by sg3451
  4

• Replace mclapply with OS-agnostic alternatives

  #7 opened a year ago by ATpoint
  5

• Discrepancy SHC and testClusters

  #20 opened a year ago by browaeysrobin
  2

• Code scRNA-seq gating plots

  #19 opened a year ago by browaeysrobin
  2

• Clarification on "Single-Cell Significance of Hierarchical Clustering" Step in sc-SHC

  #18 opened a year ago by lisch7
  1

• Underclustering with batch correction

  #10 opened a year ago by scharch
  3

• Cluster Number is Very Large

  #16 opened a year ago by DarioS
  5

• ATACseq support

  #17 opened a year ago by gszeto0
  1

• 'mc.cores' > 1 is not supported on Windows

  #14 opened a year ago by Prooomise
  3

• Finding scSHC optimal resolution?

  #15 opened a year ago by richardmustaklem
  2

• interpretation of the significance results

  #13 opened a year ago by whiteorchid
  1

• Type of count data

  #12 opened a year ago by cutleraging
  3

• Node not found

  #11 opened a year ago by ryf0810
  2

• scSHC() and testClusters with PCs as input instead of gene expression

  #9 opened a year ago by Dario-Rocha
  1

• Compatibility with spatially-aware clustering algorithms for spatial RNAseq?

  #8 opened a year ago by berniejmulvey
  1

• scSHC gives different errors with and without batch. Example data runs fine

  #6 opened a year ago by mcsimenc
  5

• High memory usage

  #5 opened a year ago by mihem
  1

• Visualising data + accessing p-values

  #4 opened a year ago by ShakedLab
  3

• Error in eigs_real_sym; k must satisfy 0 < k < rnow(A)

  #2 opened a year ago by VitorAguiar
  8

• Compatibility with integration methods

  #3 opened 2 years ago by lucia-ramirez
  1

• scSHC function Error

  #1 opened 2 years ago by cutleraging
  0