imagejan
Bio-Image Analyst / Image Data Scientist in the Facility for Advanced Imaging and Microscopy at FMI Basel
Friedrich Miescher Institute for Biomedical Research (FMI)Basel, Switzerland
Pinned Repositories
imagej-plugins-batch
Batch Processor Plugins for ImageJ
angiotool
A trial to convert AngioTool ( https://ccrod.cancer.gov/confluence/display/ROB2/Home ) into a Fiji plugin
BigTrace
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
blind-experiment
An ImageJ plugin to assist with blind analysis of image data.
image-processing-courses
batch-processor
A Batch Processor for SciJava
scijava-common
A plugin framework and application container with built-in extensibility mechanism :electric_plug:
imagejan's Repositories
imagejan/angiotool
A trial to convert AngioTool ( https://ccrod.cancer.gov/confluence/display/ROB2/Home ) into a Fiji plugin
imagejan/ActionBar
Custom toolbars and mini applications with ActionBar. Proceedings of the 2nd ImageJ User and Developer conference, Luxembourg, November 6-7th, 2008. http://dx.doi.org/10.5281/zenodo.35653
imagejan/Barcode_Codec
plugin for ImageJ to Encode/Decode 1D/2D Barcode
imagejan/CHBG
Convex Hull BG for ImageJ
imagejan/Colocalisation_Analysis
Coloc 2 is Fiji's plugin for colocalization analysis. It implements and performs the pixel intensity correlation over space methods of Pearson, Manders, Costes, Li and more, for scatterplots, analysis, automatic thresholding and statistical significance testing. Also included here are the old depreciated unsupported plugins Colocalization Threshold and Colocalization Test
imagejan/Correct_3D_Drift
imagejan/Descriptor_based_registration
imagejan/fiji
Fiji Is Just ImageJ. ***WARNING*** this repository is intended for *developers*! If you want to *use* Fiji, please download it from: http://fiji.sc/Downloads
imagejan/ggforce
Accelarating ggplot2
imagejan/ggthemes
ggplot themes and scales
imagejan/GitHub
MediaWiki extension that allows embedding the content of files hosted in GitHub git repositories
imagejan/ij-ellipsesplit
ImageJ Plugin to split binary objects by ellipse fitting
imagejan/imagej-javadoc
An aggregator for ImageJ Javadocs
imagejan/imagej-server
A RESTful web server for ImageJ [EXPERIMENTAL]
imagejan/imagej1
Wayne Rasband's ImageJ 1.x repository, updated once a night. To develop this code, use https://github.com/imagej/ImageJA.
imagejan/imageplot
ImagePlot is a free software tool that visualizes collections of images and video of any size. It is implemented as a macro which works with the open source image processing program ImageJ.
imagejan/Interactive-H-Watershed
imagejan/knip-python-extensions
KNIME Image Processing Python Bindings
imagejan/LungJ
imagejan/mcib3d-core
mcib3d core library for 3D ImageJ suite
imagejan/mcib3d-plugins
ImageJ plugins for 3D processing and analysis
imagejan/mediawiki
The ImageJ fork of MediaWiki, which runs the main ImageJ website
imagejan/op-finder
Utility for browsing, learning about and running all available Ops
imagejan/scifio-hdf5
SCIFIO format plugins for reading and writing HDF5 data.
imagejan/superset
Superset is a data exploration platform designed to be visual, intuitive, and interactive
imagejan/SyntaxHighlighter
imagejan/TraJ
Library for diffusion trajectory analysis
imagejan/TrakEM2
ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.
imagejan/TurboReg
imagejan/wormsizer
WormSizer