indexofire

indexofire's Stars

• anse-app/chatgpt-demo

  Minimal web UI for ChatGPT.

  Language:TypeScript8k562643.8k

• glouw/paperview

  A high performance X11 animated wallpaper setter

  Language:C1.5k171845

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.3k29441160

• sib-swiss/training-collection

  Collection of bioinformatics training materials

  Language:Python9884568183

• rxyhn/tokyo

  BSPWM - Aesthetic Dotfiles 🍚

  Language:Shell9577074

• marbl/CHM13

  The complete sequence of a human genome

  928689499

• chapin666/books

  Awesome Books

  923211344

• thackl/gggenomes

  A grammar of graphics for comparative genomics

  Language:R6241216165

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python545159271

• YongxinLiu/MicrobiomeStatPlot

  Interpretation and visualization of microbiome charts

  Language:HTML390244231

• YongxinLiu/EasyMetagenome

  Easy Metagenome Pipeline

  Language:HTML360910225

• igvteam/igv-reports

  Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

  Language:Python352157554

• neherlab/treetime

  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

  Language:Jupyter Notebook2311714457

• fbreitwieser/krakenuniq

  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

  Language:C++2251616744

• wdecoster/chopper

  Language:Rust15973213

• rrwick/Polypolish

  a short-read polishing tool for long-read assemblies

  Language:Rust149112510

• rrwick/Perfect-bacterial-genome-tutorial

  Language:Python12641120

• ncbi/fcs

  Foreign Contamination Screening caller scripts and documentation

  1101610015

• andersen-lab/Freyja

  Depth-weighted De-Mixing

  Language:HTML1061314530

• EBI-Metagenomics/genomes-catalogue-pipeline

  MGnify genome analysis pipeline

  Language:Python102102021

• YongxinLiu/Metagenome

  Metagenome analysis pipeline

  Language:Shell926068

• lanadominkovic/12-days-of-biopython

  12 days of Biopython is a collection of 12 videos explaining in details how to work with Biopython, a bioinformatics tool using a real life examples.

  Language:Jupyter Notebook531133

• karkman/MetagenomeCourse2019

  Course material for the metagenomics course

  Language:Shell436025

• app-generator/django-gradient-able

  Gradient Able - Open-Source Django Dashboard | App-Generator.dev

  Language:HTML405444

• egonozer/in_silico_pcr

  Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.

  Language:Perl395712

• bonsai-team/Porechop_ABI

  Adapter trimmer for Oxford Nanopore reads using ab initio method

  Language:C++384154

• INSaFLU/INSaFLU

  INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomic surveillance

  Language:Python337511

• theiagen/public_health_bacterial_genomics

  Language:WDL27510914

• CFSAN-Biostatistics/C-WAP

  SC2 variant detection and composition pipeline

  Language:HTML169288

• quick-lab/SARS-CoV-2

  SARs-CoV-2 Primer schemes

  Language:HTML15748