Pinned Repositories
dataset-edna
eDNA dataset demonstrator
manual
The OBIS manual
obis-network-datasets
Workflow for processing OBIS tagged datasets in GBIF
obis-qc
OBIS QC checks
obistools
Tools for data enhancement and quality control
PacMAN-pipeline
Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project
Project-team-Genetic-Data
Developing guidelines for adding sequence data to OBIS
pyobis
OBIS Python client
pyworms
Python client for the WoRMS REST service
robis
R client for the OBIS API
OBIS's Repositories
iobis/obis-network-datasets
Workflow for processing OBIS tagged datasets in GBIF
iobis/obis-qc
OBIS QC checks
iobis/iwg-products
Repository for the Intersessional Working Group on data products.
iobis/mgnify-extract
iobis/otga-course-review
Issues related to OBIS courses on OTGA
iobis/quality-taskteam
OBIS data quality task team
iobis/caspr
PacMAN project R tools
iobis/ckan-docker
Scripts and images to run CKAN using Docker Compose
iobis/doc-publishing-dna-derived-data
This guide shows how to publish DNA-derived spatiotemporal biodiversity data and make it discoverable through national and global biodiversity data discovery platforms. Based on experiences from Australia, Norway, Sweden, UNITE, and GBIF.
iobis/docker-geoserver
A docker recipe for GeoServer
iobis/edna-sample-analysis
In-depth single eDNA sample analysis
iobis/eDNA_trial_data
Analysis of eDNA trial samples
iobis/g7-plankton
iobis/inconsistent-lsids
iobis/ipt
GBIF Integrated Publishing Toolkit (IPT)
iobis/manual-dev
The OBIS manual
iobis/manual-int-dev
The OBIS manual
iobis/mpaeu_di_fish_abund_skagerrak
MPA Europe data ingestion - Fish abundance Skagerrak (BioTIME)
iobis/mpaeu_di_globcw_coral
Data ingestion of cold water coral dataset
iobis/mpaeu_di_marine_forests
Data ingestion for MPA Europe
iobis/mpaeu_di_microp_diversity
iobis/mpaeu_docs
Documentation for the OBIS contribution to MPA Europe
iobis/mpaeu_studyarea
Define study area shapefile for MPA Europe project
iobis/mwhs-shapes
iobis/notebook-deepdata
ISA DeepData data processing notebook
iobis/notebook-endemics
iobis/notebook-mwhs
iobis/obis-queue
iobis/obisdi
Marine Biodiversity Data Ingestion for OBIS
iobis/sequence-search