Pinned Repositories
dataset-edna
eDNA dataset demonstrator
manual
The OBIS manual
obis-network-datasets
Workflow for processing OBIS tagged datasets in GBIF
obis-qc
OBIS QC checks
obistools
Tools for data enhancement and quality control
PacMAN-pipeline
Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project
Project-team-Genetic-Data
Developing guidelines for adding sequence data to OBIS
pyobis
OBIS Python client
pyworms
Python client for the WoRMS REST service
robis
R client for the OBIS API
OBIS's Repositories
iobis/pyobis
OBIS Python client
iobis/PacMAN-pipeline
Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project
iobis/pyworms
Python client for the WoRMS REST service
iobis/manual
The OBIS manual
iobis/edna-tracker-data
GitHub action for transforming eDNA samples metadata from PlutoF
iobis/mof-viewer
iobis/mwhs-data-mobilization
Biodiversity data mobilization for marine World Heritage sites.
iobis/edna-dashboard
iobis/edna-reference-databases
iobis/edna-results
Processed eDNA Expeditions metabarcoding results
iobis/edna-analysis-climate
iobis/edna-expeditions
Technical documentation for the eDNA Expeditions project
iobis/edna-species-lists
iobis/edna-tracker
iobis/invertbase-feed
iobis/jupyterhub-deploy-docker
Reference deployment of JupyterHub with docker
iobis/mpaeu_map_platform
A platform for hosting SDM maps produced by OBIS
iobis/mpaeu_msdm
iobis/mpaeu_sdm
Habitat range maps for European marine species
iobis/obis-therm
Produces dataset of sea temperature matched to occurrence records
iobis/pacman-data-analysis
iobis/pacmandetections
iobis/resources
iobis/rs.obis.org
iobis/rspeedy
Species distribution summaries.
iobis/sampling-effort-depth
This repo contains script to generated hexagonal grids of sampling effort (number of OBIS records) by depth layer.
iobis/species-thermal-limits
Experimenting methods to estimate species thermal limits based on occurrence data
iobis/speciesgrids
iobis/speedy
Species distribution summaries.
iobis/speedy-maps
Mapbox GL JS visualization of speedy results