OBIS

Ocean Biodiversity Information System

Belgium

Pinned Repositories

dataset-edna
eDNA dataset demonstrator
Language:Jupyter Notebook8 5 12
obis-issues
Repository for all OBIS related issues and feature requests
8 14 2133
obis-network-datasets
Workflow for processing OBIS tagged datasets in GBIF
Language:Python10 11 5223
obis-qc
OBIS QC checks
Language:Python10 9 374
obistools
Tools for data enhancement and quality control
Language:R26 10 806
PacMAN-pipeline
Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project
Language:R9 7 671
Project-team-Genetic-Data
Developing guidelines for adding sequence data to OBIS
10 17 91
pyobis
OBIS Python client
Language:Jupyter Notebook15 5 6010
pyworms
Python client for the WoRMS REST service
Language:Python7 5 23
robis
R client for the OBIS API
Language:R38 11 8312

OBIS's Repositories

iobis/pyobis
OBIS Python client
Language:Jupyter Notebook15 5 6010
iobis/obis-network-datasets
Workflow for processing OBIS tagged datasets in GBIF
Language:Python10 11 5223
iobis/PacMAN-pipeline
Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project
Language:R9 7 671
iobis/manual
The OBIS manual
Language:CSS6 8 4324
iobis/obon-2024-dna-training
Training documents for OBON DNA data 2024
Language:HTML3 2 0
iobis/hackathon
Repository for hackathon resources
Language:Jupyter Notebook21
iobis/mpaeu_map_platform
A platform for hosting SDM maps produced by OBIS
Language:HTML2 2 0
iobis/mpaeu_sdm
Habitat range maps for European marine species
Language:R2 4 11
iobis/bioecoocean-demo-app
1
iobis/edna-tracker-data
GitHub action for transforming eDNA samples metadata from PlutoF
Language:Python1 3 11
iobis/pacman-pipeline-training
Training materials for the PacMAN bioinformatics pipeline
Language:HTML1 3 0
iobis/species-thermal-limits
Experimenting methods to estimate species thermal limits based on occurrence data
Language:R1 2 0
iobis/speciesgrids
Language:Python1 2 2
iobis/speedy
Species distribution summaries.
Language:Python1 2 4
iobis/edna-dashboard
Language:R0 3 50
iobis/edna-reference-databases
Language:Python0 2 10
iobis/edna-results
Processed eDNA Expeditions metabarcoding results
Language:Python0 2 50
iobis/edna-analysis-climate
Language:JavaScript2 1
iobis/invertbase-feed
Language:Python2 0
iobis/jupyterhub-deploy-docker
Reference deployment of JupyterHub with docker
Language:Python
iobis/metabarcoding-feed
Language:Python
iobis/mpaeu_biodivstatus
Biodiversity analysis for MPA Europe
Language:R
iobis/mpaeu_climatevelocity
Codes used for the deliverable 2.8 - climate velocity
Language:HTML
iobis/mpaeu_msdm
Language:R2 0
iobis/notebook-country-statistics
iobis/obis-therm
Produces dataset of sea temperature matched to occurrence records
Language:R
iobis/pacman-final-training
Training materials for the PacMAN final project meeting
Language:Python
iobis/pacmandetections
Language:Python2 2
iobis/sequence-search
Language:JavaScript2 91
iobis/speedy-maps
Mapbox GL JS visualization of speedy results
Language:JavaScript2 0