Pinned Repositories
dataset-edna
eDNA dataset demonstrator
obis-issues
Repository for all OBIS related issues and feature requests
obis-network-datasets
Workflow for processing OBIS tagged datasets in GBIF
obis-qc
OBIS QC checks
obistools
Tools for data enhancement and quality control
PacMAN-pipeline
Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project
Project-team-Genetic-Data
Developing guidelines for adding sequence data to OBIS
pyobis
OBIS Python client
pyworms
Python client for the WoRMS REST service
robis
R client for the OBIS API
OBIS's Repositories
iobis/Project-team-Genetic-Data
Developing guidelines for adding sequence data to OBIS
iobis/dataset-edna
eDNA dataset demonstrator
iobis/gbif-marine
iobis/non-matching-names
Workflow to build non matching names list
iobis/mgnify-extract
iobis/pacman-data-entry
Data submission template for the Pacific islands Marine bioinvasions Alert Network (PacMAN) project
iobis/pacman-pipeline-training
Training materials for the PacMAN bioinformatics pipeline
iobis/papers
OBIS papers from Google Scholar
iobis/bioeco-docs
iobis/bioeco-etl
ETL scripts for the GOOS BioEco networks portal
iobis/bioeco-geonode
GeoNode is an open source platform that facilitates the creation, sharing, and collaborative use of geospatial data.
iobis/bioeco-issues
GOOS BioEco portal content issues
iobis/bioeco-vocabularies
Vocabularies to be used in GeoNode
iobis/docker-geoserver
A docker recipe for GeoServer
iobis/edna-data-entry
eDNA Expeditions data entry documentation
iobis/hab-template
Scripts to convert the HAB template to Darwin Core
iobis/map
Geocoding tool
iobis/mwhs-species-lists
This is a collection of scripts for compiling species lists for marine World Heritage sites.
iobis/notebook-cclme
Canary Current LME robis demo
iobis/notebook-diversity-indicators
iobis/notebook-duplicates
Identifying duplicate datasets in OBIS
iobis/notebook-gridded-data
Gridded OBIS data using R
iobis/notebook-mwhs
iobis/notebook-ospar
OBIS species richness for OSPAR
iobis/notebook-reeffish
Data exploration - Stratified random surveys (StRS) of reef fish in the U.S. Pacific Islands
iobis/notebook-stateoftheocean
iobis/notebook-windfarms
Data exploration of wind farm monitoring datasets in OBIS
iobis/presentation-anca-2021
ANCA IOCARIBE HAIS HAEDAT training course
iobis/qc-service
Web service for additional quality control of data for OBIS
iobis/reports
OBIS reports page