Variable referenced before assigning

Question

Variable referenced before assigning

rneher opened this issue 7 years ago · 3 comments

is just installed seqanpy on the basel cluster and got errors when calling alignment routines (quite possibly a swig version issue). It complains that seq1 is not defined in the statement seq1="".join(seq1) where seq1 is supposed to be the first argument of the function. But swig defined the function as align_overlap(*args, **kwargs)

I removed the prepend statements for now and it works. but I thought you might want to know...

cheers,
richard

Answer 1 · 2017-06-29T16:27:08.000Z

Hi Richard, You need SWIG 3.0.8+ Cheers Fabio

…

On June 29, 2017 9:09:57 AM PDT, Richard Neher ***@***.***> wrote: hi @iosonofabio is just installed seqanpy on the basel cluster and got errors when calling alignment routines (quite possibly a swig version issue). It complains that `seq1` is not defined in the statement `seq1="".join(seq1)` where `seq1` is supposed to be the first argument of the function. But swig defined the function as `align_overlap(*args, **kwargs)` I removed the prepend statements for now and it works. but I thought you might want to know... cheers, richard -- You are receiving this because you were mentioned. Reply to this email directly or view it on GitHub: #1

Answer 2 · 2017-06-29T16:29:48.000Z

I could also make a binary with _manylinux and distribute it on Pypi but it'll take a month

…

On June 29, 2017 9:09:57 AM PDT, Richard Neher ***@***.***> wrote: hi @iosonofabio is just installed seqanpy on the basel cluster and got errors when calling alignment routines (quite possibly a swig version issue). It complains that `seq1` is not defined in the statement `seq1="".join(seq1)` where `seq1` is supposed to be the first argument of the function. But swig defined the function as `align_overlap(*args, **kwargs)` I removed the prepend statements for now and it works. but I thought you might want to know... cheers, richard -- You are receiving this because you were mentioned. Reply to this email directly or view it on GitHub: #1

Answer 3 · 2017-06-29T16:31:50.000Z

thanks. just saw that swig 3.0.10 is in conda. this will work. thanks.