ivanferrreira

ivanferrreira's Stars

• GreenleafLab/ArchR

  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

  Language:R380151.1k135

• r3fang/SnapATAC

  Analysis Pipeline for Single Cell ATAC-seq

  Language:R30114255125

• dylkot/cNMF

  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

  Language:Jupyter Notebook26769157

• aertslab/scenicplus

  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

  Language:Jupyter Notebook1781031128

• kundajelab/chrombpnet

  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

  Language:Jupyter Notebook1153812531

• aertslab/pycisTopic

  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

  Language:Jupyter Notebook561214111

• CostaLab/scopen

  scOpen: single-cell open chromatin analysis via NMF modelling

  Language:Python256104

• Sarah145/scRNA_pre_process

  Processing scRNA-seq data with kallisto|bustools pipeline

  Language:R18103

• aertslab/DeepMEL

  Language:Jupyter Notebook6715

• aertslab/Melanoma_MPRA_paper

  Melanoma MPRA paper

  Language:Jupyter Notebook160

• JulienPPichon/UTR_extension_GTF

  Language:Python1