j-darocha

j-darocha's Stars

• pha4ge/pipeline-resources

  Bioinformatics Pipeline and Visualization resources

  5328

• yWorks/yfiles-for-html-demos

  The source code demos for the yFiles for HTML diagramming library

  412286

• ucsc-cgp/training-resources

  Training materials for staff and community members

  Language:wdl22

• wtsi-npg/containers

  Singularity and Docker material

  Language:Dockerfile16

• khourious/SARS-COV-2_B4B

  This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course

  Language:Jupyter Notebook21

• jennybc/happy-git-with-r

  Using Git and GitHub with R, Rstudio, and R Markdown

  Language:TeX587332

• Psy-Fer/interARTIC

  InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..

  Language:CSS297

• BioWilko/ncov2019-artic-nf

  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

  Language:Python3

• dezordi/ViralFlow

  Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM

  Language:Python2914

• openwdl/wdl

  Workflow Description Language - Specification and Implementations

  761307

• broadinstitute/genomics-in-the-cloud

  Source code and related materials for the O'Reilly book

  Language:Jupyter Notebook9126

• anopheles-genomic-surveillance/anopheles-genomic-surveillance.github.io

  Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN

  721

• phac-nml/ncov-dehoster

  Removal of human reads from ncov nanopore sequencing data

  Language:Nextflow54

• lescai-teaching/nf-vscode-colab

  Google Colab notebook to run basic Nextflow commands and use a VS Code server session

  Language:Jupyter Notebook1

• cambiotraining/sars-cov-2-genomics

  Course materials for an introduction to SARS-CoV-2 sequencing data analysis

  Language:Shell137

• m-crown/SPEAR

  Systematic ProtEin AnnotatoR

  Language:Python19

• connor-lab/ncov2019-artic-nf

  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

  Language:Nextflow8889

• Developer-Y/cs-video-courses

  List of Computer Science courses with video lectures.

  66.3k9k

• STRIDES-Codes/Enhancing-the-capacity-of-variant-effect-prediction-a-multidisciplinary-application

  Language:Jupyter Notebook21

• shilpagarg/DipAsm

  Language:Shell7518

• phelelani/nf-tut-2020

  Language:Nextflow713

• phelelani/transcriptomics

  Language:R1

• harvardinformatics/learning-bioinformatics-at-home

  resources for learning bioinformatics

  755141

• Ensembl/VEP_plugins

  Plugins for the Ensembl Variant Effect Predictor (VEP)

  Language:Perl137114

• ziyaadparker/african_genomics_medicine_portal

  African Genomics Precision Medicine Portal

  Language:JavaScript11

• h3abionet/recalling

  Scripts for recalling several available datasets. The final output will be used by different H3A projects, e.g. ADME, refpanel. An improved fork of this repos is here: https://github.com/grbot/varcall

  Language:Nextflow32

• joiningdata/lollipops

  Lollipop-style mutation diagrams for annotating genetic variations.

  Language:Go18069

• ziyaadparker/precision_medicine_portal

  African Precision Medicine Portal

  Language:HTML1

• EvanBaugh/VIPUR

  A method for identifying deleterious protein variation.

  Language:C++115

• Ensembl/ensembl-vep

  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

  Language:Perl444151